Variant

Genome Chromosome Position VCF ID Ref Alt mRNA Change mRNA Info
GRCh37 chr3 57569705 . T A CCDS2884.1:NM_001660.3:c.178Aac>Tac_NP_001651.1:p.60N>Y Homo sapiens ADP ribosylation factor 4 (ARF4), mRNA.
pdb_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 
alphafold_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 

PDB

Entity Residue Monomer BioUnit Ligand View
PDB Entity Uniprot Identity Evalue ExpMethod Date Name Label Auth ASA rASA SS φ ψ ASA rASA ΔASA Interaction Name Distance Atom(p) Atom(l)
1z6x 1 P18085 100.0 5e-133 X-RAY
 2005-04-12 ASN A:60 A:60 15.0 0.094 S -94.1 -28.6 15.0 0.094 0.0 HOH
 3.946
 ND2
 O
ASN B:60 B:60 24.0 0.15 S -84.2 -9.4 NA NA NA
2b6h 1 P84085 90.8 5e-119 X-RAY
 2005-10-11 ASN A:72 A:60 16.0 0.1 T -80.8 -0.2 16.0 0.1 0.0 HOH
 2.730
 OD1
 O
3aq4 1 P36397 80.56 1e-109 X-RAY
 2011-01-26 ASN A:63 A:60 35.0 0.219 T -85.8 8.2 35.0 0.219 0.0 HOH
 2.886
 OD1
 O
ASN B:63 B:60 12.0 0.075 T -88.7 10.0 NA NA NA
1r8q 1 P84080 81.92 2e-108 X-RAY
 2004-01-20 ASN A:60 A:60 32.0 0.2 S 68.7 -22.6 32.0 0.2 0.0 HOH
 7.510
 N
 O
ASN C:60 B:60 25.0 0.156 T 83.6 -49.8 NA NA NA
1rrf 1 P84079 81.92 2e-108 X-RAY
 1996-06-20 ASN A:60 A:60 13.0 0.081 T -116.6 18.3 13.0 0.081 0.0
1rrg 1 P84079 81.92 2e-108 X-RAY
 1996-06-20 ASN A:60 A:60 15.0 0.094 S -84.8 -9.6 15.0 0.094 0.0 HOH
 5.617
 N
 O
ASN B:60 B:60 31.0 0.194 S -98.8 25.3 31.0 0.194 0.0 HOH
 3.824
 O
 O
1hur 1 P84077 81.82 2e-107 X-RAY
 1995-07-10 ASN A:59 A:60 15.0 0.094 T -69.7 -10.5 15.0 0.094 0.0 HOH
 9.246
 N
 O
ASN B:59 B:60 10.0 0.062 T -93.5 -9.3 10.0 0.062 0.0 HOH
 2.856
 O
 O
3o47 1 Q8N6T3,P84077 84.94 5e-103 X-RAY
 2010-08-11 ASN A:208 A:190 51.0 0.319 T -91.2 -19.8 51.0 0.319 0.0
ASN B:208 B:190 83.0 0.519 T -89.6 -0.1 NA NA NA
6ii6 2 P61204 82.53 2e-102 X-RAY
 2019-08-07 ASN C:48 C:60 79.0 0.494 T -73.8 -9.7 79.0 0.494 0.0 HOH
 5.735
 N
 O
ASN D:48 D:60 88.0 0.55 T 70.0 14.0 NA NA NA
7mge 4 P84077 84.47 7e-102 EM
 2021-06-23 ASN D:46 E:60 132.0 0.825 T 67.0 22.2 132.0 0.825 0.0
7dn8 2 P84077 82.93 1e-101 X-RAY
 2021-12-15 ASN B:48 D:60 124.0 0.775 T 59.8 22.2 124.0 0.775 0.0 HOH
 9.721
 N
 O
ASN D:48 B:60 131.0 0.819 T 58.9 21.1 NA NA NA
ASN F:48 F:60 124.0 0.775 T 58.8 22.1 NA NA NA
ASN H:48 H:60 124.0 0.775 T 59.3 22.3 NA NA NA
1r8s 1 P84080 85.0 1e-101 X-RAY
 2004-01-20 ASN A:43 A:60 159.0 0.994 S -113.1 1.4 159.0 0.994 0.0 HOH
 4.587
 C
 O
1re0 1 P32889 85.0 1e-101 X-RAY
 2003-12-16 ASN A:43 A:60 141.0 0.881 T 60.3 4.0 137.0 0.856 0.025 B:P47102:0.025
 HOH
 4.915
 CB
 O
1s9d 1 P84080 85.0 1e-101 X-RAY
 2004-02-10 ASN A:43 A:60 146.0 0.912 T 62.3 26.1 146.0 0.912 0.0 HOH
 2.827
 N
 O
1u81 1 P84077 85.0 1e-101 NMR
 2004-10-05 ASN A:43 A:60 116.0 0.725 T -65.5 -32.1 116.0 0.725 0.0
4c0a 2 P84080 85.0 1e-101 X-RAY
 2013-09-25 ASN C:43 C:60 144.0 0.9 S 68.8 18.6 NA NA NA
ASN D:43 D:60 144.0 0.9 S 65.9 23.1 NA NA NA
ASN G:43 G:60 132.0 0.825 S 65.9 20.2 132.0 0.825 0.0
ASN H:43 H:60 152.0 0.95 S 67.3 20.4 NA NA NA
6fae 2 P84077 83.95 4e-101 X-RAY
 2018-01-17 ASN B:92 B:60 71.0 0.444 S 63.0 33.6 71.0 0.444 0.0 HOH
 2.550
 OD1
 O
4hmy 5 P84077 83.85 2e-100 X-RAY
 2013-03-06 ASN E:51 C:60 115.0 0.719 S 47.3 29.6 115.0 0.719 0.0
6cri 3 P84077 83.85 2e-100 EM
 2018-08-01 ASN C:44 C:60 146.0 0.912 T 56.6 20.7 146.0 0.912 0.0
ASN E:44 H:60 161.0 1.0 T 37.4 39.5 57.0 0.356 0.644 M:P84077:0.65
ASN K:44 K:60 146.0 0.912 T 57.6 21.0 146.0 0.912 0.0
ASN M:44 U:60 141.0 0.881 T 46.2 21.5 46.0 0.287 0.594 U:P84077:0.594
ASN S:44 L:60 149.0 0.931 T 60.2 17.1 149.0 0.931 0.0
ASN U:44 V:60 149.0 0.931 T 35.9 41.0 149.0 0.931 0.0
7dn9 2 P84077 83.85 2e-100 X-RAY
 2021-12-15 ASN B:44 B:60 180.0 1.0 T 57.5 30.5 180.0 1.0 0.0
ASN D:44 D:60 178.0 1.0 T 57.4 30.2 NA NA NA
ASN F:44 F:60 176.0 1.0 T 57.5 29.4 NA NA NA
ASN H:44 H:60 175.0 1.0 T 57.6 30.3 NA NA NA
1j2j 1 Q8BSL7 84.38 3e-100 X-RAY
 2003-05-06 ASN A:45 A:60 154.0 0.963 T 65.9 19.4 154.0 0.963 0.0 HOH
 3.315
 N
 O
1o3y 1 P84078 84.38 3e-100 X-RAY
 2003-05-20 ASN A:45 A:60 123.0 0.769 T 68.6 17.8 123.0 0.769 0.0 HOH
 2.665
 OD1
 O
ASN B:45 B:60 172.0 1.0 T 70.8 8.5 NA NA NA
2j59 1 P84078 84.38 3e-100 X-RAY
 2007-02-20 ASN A:45 A:60 161.0 1.0 T 65.9 19.8 161.0 1.0 0.0 HOH
 2.890
 N
 O
ASN B:45 B:60 164.0 1.0 T 67.1 11.9 NA NA NA
ASN C:45 C:60 162.0 1.0 T 66.6 19.5 NA NA NA
ASN D:45 D:60 160.0 1.0 T 68.5 13.5 NA NA NA
ASN E:45 E:60 152.0 0.95 T 59.4 25.5 NA NA NA
ASN F:45 F:60 164.0 1.0 T 64.2 20.9 NA NA NA

AlphaFold DB

Entity Residue Monomer View
ID Entity Uniprot Identity Evalue Name Label Auth ASA rASA SS φ ψ
af-p18085-f1 1 P18085 100.0 2e-133 ASN A:60 A:60 81.0 0.506 T -94.9 6.4
af-p84085-f1 1 P84085 90.0 2e-123 ASN A:60 A:60 74.0 0.463 T -96.5 9.6
af-p84077-f1 1 P84077 81.92 1e-108 ASN A:60 A:60 80.0 0.5 T -101.4 14.4