Variant

Genome Chromosome Position VCF ID Ref Alt mRNA Change mRNA Info
GRCh37 chr4 100805266 . C A CCDS3652.1:NM_021970.3:c.254cGt>cTt_NP_068805.1:p.85R>L Homo sapiens late endosomal/lysosomal adaptor, MAPK and MTOR activator 3 (LAMTOR3), transcript variant 1, mRNA.
pdb_id: 
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alphafold_id: 
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PDB

Entity Residue Monomer BioUnit Ligand View
PDB Entity Uniprot Identity Evalue ExpMethod Date Name Label Auth ASA rASA SS φ ψ ASA rASA ΔASA Interaction Name Distance Atom(p) Atom(l)
5y39 3 Q9UHA4 100.0 4e-88 X-RAY
 2017-12-06 ARG C:85 C:85 76.0 0.338 E -132.9 42.5 76.0 0.338 0.0 HOH
 2.800
 NH2
 O
ARG H:85 H:85 65.0 0.289 E -118.3 44.5 NA NA NA
5y3a 3 Q9UHA4 100.0 4e-88 X-RAY
 2017-12-27 ARG C:85 C:85 48.0 0.213 E -136.9 55.7 48.0 0.213 0.0 HOH
 3.105
 NH1
 O
ARG H:85 H:85 59.0 0.262 E -142.5 52.0 NA NA NA
5yk3 1 Q9UHA4 100.0 4e-88 X-RAY
 2019-01-23 ARG A:85 m:85 74.0 0.329 E -118.0 99.7 74.0 0.329 0.0
ARG K:85 H:85 50.0 0.222 E -119.9 40.8 NA NA NA
6b9x 3 Q9UHA4 100.0 4e-88 X-RAY
 2017-11-08 ARG C:85 C:85 50.0 0.222 E -132.1 62.6 50.0 0.222 0.0 HOH
 4.787
 C
 O
6nzd 3 Q9UHA4 100.0 4e-88 EM
 2019-11-06 ARG C:85 C:85 50.0 0.222 E -132.1 62.6 50.0 0.222 0.0
6ulg 2 Q9UHA4 100.0 4e-88 EM
 2019-11-20 ARG B:85 A:85 33.0 0.147 E -136.9 50.9 33.0 0.147 0.0
6wj2 3 Q9UHA4 100.0 4e-88 EM
 2020-09-02 ARG C:85 C:85 105.0 0.467 S -118.5 -52.0 105.0 0.467 0.0
6wj3 3 Q9UHA4 100.0 4e-88 EM
 2020-09-02 ARG C:85 C:85 89.0 0.396 S -127.6 -24.3 89.0 0.396 0.0
6ehp 1 Q9UHA4 100.0 4e-88 X-RAY
 2017-10-04 ARG A:88 A:85 47.0 0.209 E -127.9 54.8 47.0 0.209 0.0 HOH
 4.035
 N
 O
6ehr 1 Q9UHA4 100.0 4e-88 X-RAY
 2017-10-04 ARG A:88 A:85 52.0 0.231 E -121.6 56.6 52.0 0.231 0.0
6u62 6 Q9UHA4 100.0 1e-87 EM
 2019-10-30 ARG F:85 F:85 64.0 0.284 B -119.1 128.1 64.0 0.284 0.0
5x6u 1 Q9UHA4 100.0 3e-87 X-RAY
 2017-12-06 ARG A:88 A:85 60.0 0.267 E -126.3 54.5 60.0 0.267 0.0 HOH
 3.037
 CD
 O
5x6v 1 Q9UHA4 100.0 3e-87 X-RAY
 2017-12-06 ARG A:88 A:85 69.0 0.307 E -133.5 40.0 69.0 0.307 0.0 HOH
 2.809
 NH1
 O
1sko 1 Q9UHA4 100.0 4e-87 X-RAY
 2004-06-01 ARG A:104 A:86 71.0 0.316 E -117.5 41.6 71.0 0.316 0.0 HOH
 2.393
 NE
 O
3cpt 1 Q9UHA4 100.0 4e-87 X-RAY
 2008-07-01 ARG A:104 A:85 64.0 0.284 E -135.0 57.1 64.0 0.284 0.0 HOH
 2.588
 NH2
 O
5yk3 6 Q9UHA4 100.0 2e-86 X-RAY
 2019-01-23 ARG F:85 C:85 53.0 0.236 E -116.9 33.7 NA NA NA
2zl1 1 Q9UHA4 98.37 1e-85 X-RAY
 2008-06-24 ARG A:104 A:85 61.0 0.271 E -127.1 48.2 61.0 0.271 0.0 HOH
 3.134
 NH2
 O
1vet 1 O88653 97.58 3e-85 X-RAY
 2004-08-03 ARG A:85 A:85 77.0 0.342 E -141.4 41.9 77.0 0.342 0.0 HOH
 2.667
 NH2
 O
1veu 1 O88653 97.58 3e-85 X-RAY
 2004-08-03 ARG A:85 A:85 66.0 0.293 E -130.4 22.8 66.0 0.293 0.0 HOH
 2.811
 NH1
 O

AlphaFold DB

Entity Residue Monomer View
ID Entity Uniprot Identity Evalue Name Label Auth ASA rASA SS φ ψ
af-q9uha4-f1 1 Q9UHA4 100.0 2e-88 ARG A:85 A:85 77.0 0.342 E -120.1 30.9