Variant

Genome Chromosome Position VCF ID Ref Alt mRNA Change mRNA Info
GRCh37 chr4 100805273 . A C CCDS3652.1:NM_021970.3:c.247Ttt>Gtt_NP_068805.1:p.83F>V Homo sapiens late endosomal/lysosomal adaptor, MAPK and MTOR activator 3 (LAMTOR3), transcript variant 1, mRNA.
pdb_id: 
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alphafold_id: 
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PDB

Entity Residue Monomer BioUnit Ligand View
PDB Entity Uniprot Identity Evalue ExpMethod Date Name Label Auth ASA rASA SS φ ψ ASA rASA ΔASA Interaction Name Distance Atom(p) Atom(l)
5y39 3 Q9UHA4 100.0 4e-88 X-RAY
 2017-12-06 PHE C:83 C:83 8.0 0.038 E -116.7 138.0 8.0 0.038 0.0 HOH
 3.673
 CE2
 O
PHE H:83 H:83 4.0 0.019 E -105.5 132.9 NA NA NA
5y3a 3 Q9UHA4 100.0 4e-88 X-RAY
 2017-12-27 PHE C:83 C:83 16.0 0.076 E -129.5 133.4 16.0 0.076 0.0 HOH
 9.554
 CD2
 O
PHE H:83 H:83 14.0 0.067 E -114.6 130.0 NA NA NA
5yk3 1 Q9UHA4 100.0 4e-88 X-RAY
 2019-01-23 PHE A:83 m:83 12.0 0.057 E -117.1 133.5 12.0 0.057 0.0
PHE K:83 H:83 16.0 0.076 E -115.6 140.8 NA NA NA
6b9x 3 Q9UHA4 100.0 4e-88 X-RAY
 2017-11-08 PHE C:83 C:83 11.0 0.052 E -126.7 140.5 11.0 0.052 0.0 HOH
 3.542
 CE1
 O
6nzd 3 Q9UHA4 100.0 4e-88 EM
 2019-11-06 PHE C:83 C:83 12.0 0.057 E -126.7 140.6 12.0 0.057 0.0
6ulg 2 Q9UHA4 100.0 4e-88 EM
 2019-11-20 PHE B:83 A:83 6.0 0.029 E -115.2 158.8 6.0 0.029 0.0
6wj2 3 Q9UHA4 100.0 4e-88 EM
 2020-09-02 PHE C:83 C:83 16.0 0.076 E -117.2 157.7 16.0 0.076 0.0
6wj3 3 Q9UHA4 100.0 4e-88 EM
 2020-09-02 PHE C:83 C:83 12.0 0.057 E -119.1 160.6 12.0 0.057 0.0
6ehp 1 Q9UHA4 100.0 4e-88 X-RAY
 2017-10-04 PHE A:86 A:83 16.0 0.076 E -122.5 137.4 16.0 0.076 0.0 HOH
 3.571
 CE2
 O
6ehr 1 Q9UHA4 100.0 4e-88 X-RAY
 2017-10-04 PHE A:86 A:83 13.0 0.062 E -110.3 145.5 13.0 0.062 0.0
6u62 6 Q9UHA4 100.0 1e-87 EM
 2019-10-30 PHE F:83 F:83 13.0 0.062 E -124.4 168.8 13.0 0.062 0.0
5x6u 1 Q9UHA4 100.0 3e-87 X-RAY
 2017-12-06 PHE A:86 A:83 15.0 0.071 E -112.2 142.1 15.0 0.071 0.0 HOH
 3.448
 CB
 O
5x6v 1 Q9UHA4 100.0 3e-87 X-RAY
 2017-12-06 PHE A:86 A:83 14.0 0.067 E -119.5 139.3 14.0 0.067 0.0 HOH
 3.504
 CE2
 O
1sko 1 Q9UHA4 100.0 4e-87 X-RAY
 2004-06-01 PHE A:102 A:84 4.0 0.019 E -115.6 136.0 4.0 0.019 0.0 HOH
 3.413
 CE1
 O
3cpt 1 Q9UHA4 100.0 4e-87 X-RAY
 2008-07-01 PHE A:102 A:83 9.0 0.043 E -108.0 133.3 9.0 0.043 0.0 HOH
 3.658
 C
 O
5yk3 6 Q9UHA4 100.0 2e-86 X-RAY
 2019-01-23 PHE F:83 C:83 13.0 0.062 E -121.3 140.5 NA NA NA
2zl1 1 Q9UHA4 98.37 1e-85 X-RAY
 2008-06-24 PHE A:102 A:83 8.0 0.038 E -118.9 134.3 7.0 0.033 0.005 B:Q9JHS3:0.005
 HOH
 3.534
 CE1
 O
1vet 1 O88653 97.58 3e-85 X-RAY
 2004-08-03 PHE A:83 A:83 8.0 0.038 E -120.2 137.2 8.0 0.038 0.0 HOH
 3.611
 CE2
 O
1veu 1 O88653 97.58 3e-85 X-RAY
 2004-08-03 PHE A:83 A:83 9.0 0.043 E -111.0 144.6 9.0 0.043 0.0 HOH
 3.789
 CD2
 O

AlphaFold DB

Entity Residue Monomer View
ID Entity Uniprot Identity Evalue Name Label Auth ASA rASA SS φ ψ
af-q9uha4-f1 1 Q9UHA4 100.0 2e-88 PHE A:83 A:83 10.0 0.048 E -117.4 133.5