Variant

Genome Chromosome Position VCF ID Ref Alt mRNA Change mRNA Info
GRCh37 chr4 103504030 . C A CCDS3657.1:NM_003998.3:c.843atC>atA_NP_003989.2:p.281I>I Homo sapiens nuclear factor kappa B subunit 1 (NFKB1), transcript variant 1, mRNA.
pdb_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 
alphafold_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 

PDB

Entity Residue Monomer BioUnit Ligand View
PDB Entity Uniprot Identity Evalue ExpMethod Date Name Label Auth ASA rASA SS φ ψ ASA rASA ΔASA Interaction Name Distance Atom(p) Atom(l)
1svc 2 P19838 99.73 0.0 X-RAY
 1996-06-10 ILE B:280 P:281 5.0 0.029 -145.3 145.7 5.0 0.029 0.0 DG
HOH
 9.767
4.897
 CG2
CB
 OP1
O
2v2t 2 P25799 98.16 0.0 X-RAY
 2007-07-03 ILE B:241 B:278 7.0 0.04 E -104.1 155.3 7.0 0.04 0.0 DG
HOH
 9.338
7.984
 CG2
N
 OP1
O
1nfk 2 P25799 98.15 0.0 X-RAY
 1996-12-23 ILE C:240 A:278 6.0 0.034 E -98.7 154.9 6.0 0.034 0.0 DA
HOH
 9.518
3.712
 CG2
CD1
 OP1
H2
ILE D:240 B:278 3.0 0.017 -142.0 146.7 3.0 0.017 0.0 DA
HOH
 9.707
2.006
 CG2
O
 OP1
H1
1ooa 2 P25799 98.15 0.0 X-RAY
 2003-07-22 ILE C:241 A:278 9.0 0.051 -154.2 150.6 9.0 0.051 0.0 HOH
 4.242
 O
 O
ILE D:241 B:278 3.0 0.017 -155.7 152.3 NA NA NA
2o61 4 P19838 100.0 0.0 X-RAY
 2007-07-24 ILE D:242 B:278 4.0 0.023 E -137.7 141.4 4.0 0.023 0.0 DA
HOH
 9.676
7.342
 CG2
N
 OP1
O
1le5 4 P25799 98.08 0.0 X-RAY
 2003-04-15 ILE F:241 B:278 4.0 0.023 -149.5 150.0 4.0 0.023 0.0 DA
HOH
 9.603
3.602
 CG2
O
 OP1
O
ILE H:241 F:278 7.0 0.04 -149.1 147.8 NA NA NA
1le9 4 P25799 98.08 0.0 X-RAY
 2003-04-15 ILE F:241 B:278 9.0 0.051 E -132.7 149.5 9.0 0.051 0.0 DA
 9.908
 CG2
 OP1
ILE H:241 F:278 11.0 0.063 E -133.0 145.1 NA NA NA
1lei 4 P25799 98.08 0.0 X-RAY
 2003-04-15 ILE D:241 B:278 6.0 0.034 -148.9 152.3 6.0 0.034 0.0 DA
HOH
 9.502
4.630
 CG2
O
 OP1
O
2i9t 4 P25799 98.08 0.0 X-RAY
 2007-02-06 ILE D:241 B:578 2.0 0.011 E -132.8 150.4 2.0 0.011 0.0 DA
 9.366
 CG2
 OP1
1vkx 4 P25799 98.08 0.0 X-RAY
 1998-12-09 ILE D:240 B:578 7.0 0.04 B -141.8 155.6 7.0 0.04 0.0
3gut 2 P19838 98.08 0.0 X-RAY
 2009-09-08 ILE B:240 B:578 4.0 0.023 E -135.3 148.4 4.0 0.023 0.0 DA
 9.758
 CG2
 OP1
ILE D:240 D:578 4.0 0.023 -161.4 148.5 4.0 0.023 0.0
ILE F:240 F:578 4.0 0.023 E -145.4 144.1 NA NA NA
ILE H:240 H:578 5.0 0.029 -157.3 157.6 NA NA NA
1ikn 2 P25799 99.16 5e-80 X-RAY
 1999-04-12 ILE B:34 C:278 5.0 0.029 E -144.7 150.7 5.0 0.029 0.0 HOH
 5.483
 O
 O
3jv4 2 P25799 99.13 4e-77 X-RAY
 2010-11-24 ILE B:34 B:278 3.0 0.017 E -118.0 148.4 3.0 0.017 0.0
ILE D:34 D:278 8.0 0.046 -164.1 153.0 NA NA NA
ILE F:34 F:278 15.0 0.086 E -121.3 151.0 NA NA NA
1nfi 2 P19838 100.0 4e-72 X-RAY
 1998-11-18 ILE B:33 B:281 5.0 0.029 -150.6 145.7 5.0 0.029 0.0 HOH
 2.773
 O
 O
ILE D:33 D:281 5.0 0.029 -153.5 145.6 NA NA NA
1u36 1 P25799 97.17 3e-70 X-RAY
 2004-08-17 ILE A:34 A:278 5.0 0.029 -146.8 139.9 5.0 0.029 0.0 HOH
 2.726
 O
 O
1u41 1 P25799 98.11 3e-70 X-RAY
 2004-08-17 ILE A:34 A:278 13.0 0.074 -154.3 360.0 13.0 0.074 0.0 HOH
 2.915
 O
 O
ILE B:34 B:278 4.0 0.023 -148.2 142.1 4.0 0.023 0.0 HOH
 2.879
 O
 O
ILE C:34 C:278 5.0 0.029 E -78.9 149.3 NA NA NA
ILE D:34 D:278 5.0 0.029 -149.3 149.5 NA NA NA
1bfs 1 P25799 99.06 2e-69 X-RAY
 1998-01-28 ILE A:34 A:278 1.0 0.006 -154.4 141.0 1.0 0.006 0.0 HOH
 1.907
 O
 H1
1u3y 1 P25799 97.17 2e-69 X-RAY
 2004-08-17 ILE A:34 A:278 6.0 0.034 -147.9 138.4 6.0 0.034 0.0 HOH
 2.768
 O
 O
1u3j 1 P25799 98.11 2e-68 X-RAY
 2004-08-17 ILE A:34 A:278 5.0 0.029 -141.6 140.5 5.0 0.029 0.0 HOH
 2.750
 O
 O
1u42 1 P25799 97.17 4e-68 X-RAY
 2004-08-17 ILE A:34 A:278 52.0 0.297 -124.0 154.4 5.0 0.029 0.268 A:P25799:0.269
 HOH
 4.174
 O
 O
1u3z 1 P25799 97.17 7e-68 X-RAY
 2004-08-17 ILE A:34 A:278 6.0 0.034 -149.0 137.5 6.0 0.034 0.0 HOH
 2.674
 O
 O

AlphaFold DB

Entity Residue Monomer View
ID Entity Uniprot Identity Evalue Name Label Auth ASA rASA SS φ ψ
af-p19838-f1 1 P19838 99.9 0.0 ILE A:280 A:280 1.0 0.006 E -118.7 148.6