Variant

Genome Chromosome Position VCF ID Ref Alt mRNA Change mRNA Info
GRCh37 chr4 103504037 . C A CCDS3657.1:NM_003998.3:c.850Cga>Aga_NP_003989.2:p.284R>R Homo sapiens nuclear factor kappa B subunit 1 (NFKB1), transcript variant 1, mRNA.
pdb_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 
alphafold_id: 
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PDB

Entity Residue Monomer BioUnit Ligand View
PDB Entity Uniprot Identity Evalue ExpMethod Date Name Label Auth ASA rASA SS φ ψ ASA rASA ΔASA Interaction Name Distance Atom(p) Atom(l)
1svc 2 P19838 99.73 0.0 X-RAY
 1996-06-10 ARG B:283 P:284 29.0 0.129 E -97.7 124.4 29.0 0.129 0.0 HOH
 5.100
 NH1
 O
2v2t 2 P25799 98.16 0.0 X-RAY
 2007-07-03 ARG B:244 B:281 41.0 0.182 E -92.6 107.6 41.0 0.182 0.0
1nfk 2 P25799 98.15 0.0 X-RAY
 1996-12-23 ARG C:243 A:281 42.0 0.187 E -109.4 115.5 42.0 0.187 0.0 HOH
 2.444
 HH12
 H1
ARG D:243 B:281 44.0 0.196 E -107.6 128.7 44.0 0.196 0.0 HOH
 2.808
 HH21
 H2
1ooa 2 P25799 98.15 0.0 X-RAY
 2003-07-22 ARG C:244 A:281 39.0 0.173 E -106.5 128.9 39.0 0.173 0.0 HOH
 2.705
 NH2
 O
ARG D:244 B:281 34.0 0.151 E -103.5 127.3 NA NA NA
2o61 4 P19838 100.0 0.0 X-RAY
 2007-07-24 ARG D:245 B:281 35.0 0.156 E -115.7 134.1 35.0 0.156 0.0
1le5 4 P25799 98.08 0.0 X-RAY
 2003-04-15 ARG F:244 B:281 23.0 0.102 E -133.5 122.0 23.0 0.102 0.0 HOH
 4.942
 CD
 O
ARG H:244 F:281 41.0 0.182 E -132.7 126.2 NA NA NA
1le9 4 P25799 98.08 0.0 X-RAY
 2003-04-15 ARG F:244 B:281 41.0 0.182 E -114.1 131.6 41.0 0.182 0.0
ARG H:244 F:281 49.0 0.218 E -115.6 129.3 NA NA NA
1lei 4 P25799 98.08 0.0 X-RAY
 2003-04-15 ARG D:244 B:281 41.0 0.182 E -110.9 135.0 41.0 0.182 0.0 HOH
 9.157
 N
 O
2i9t 4 P25799 98.08 0.0 X-RAY
 2007-02-06 ARG D:244 B:581 34.0 0.151 E -114.5 113.9 34.0 0.151 0.0
1vkx 4 P25799 98.08 0.0 X-RAY
 1998-12-09 ARG D:243 B:581 19.0 0.084 E -138.8 116.1 19.0 0.084 0.0
3gut 2 P19838 98.08 0.0 X-RAY
 2009-09-08 ARG B:243 B:581 35.0 0.156 E -108.7 129.2 35.0 0.156 0.0
ARG D:243 D:581 34.0 0.151 E -109.9 112.3 34.0 0.151 0.0
ARG F:243 F:581 36.0 0.16 E -108.7 127.5 NA NA NA
ARG H:243 H:581 35.0 0.156 E -113.1 116.3 NA NA NA
1ikn 2 P25799 99.16 5e-80 X-RAY
 1999-04-12 ARG B:37 C:281 35.0 0.156 E -104.2 120.2 35.0 0.156 0.0 HOH
 4.633
 N
 O
3jv4 2 P25799 99.13 4e-77 X-RAY
 2010-11-24 ARG B:37 B:281 28.0 0.124 E -91.2 122.0 28.0 0.124 0.0
ARG D:37 D:281 31.0 0.138 E -122.7 113.1 NA NA NA
ARG F:37 F:281 36.0 0.16 E -88.8 119.0 NA NA NA
1nfi 2 P19838 100.0 4e-72 X-RAY
 1998-11-18 ARG B:36 B:284 34.0 0.151 E -97.9 123.8 34.0 0.151 0.0 HOH
 4.346
 NH1
 O
ARG D:36 D:284 35.0 0.156 E -98.1 124.3 NA NA NA
1u36 1 P25799 97.17 3e-70 X-RAY
 2004-08-17 ARG A:37 A:281 29.0 0.129 E -111.1 123.3 29.0 0.129 0.0 HOH
 3.156
 NH2
 O
1u41 1 P25799 98.11 3e-70 X-RAY
 2004-08-17 ARG A:37 A:281 34.0 0.151 E -105.1 111.2 34.0 0.151 0.0 HOH
 3.252
 NH2
 O
ARG B:37 B:281 26.0 0.116 E -110.5 122.6 26.0 0.116 0.0 HOH
 3.005
 NH1
 O
ARG C:37 C:281 46.0 0.204 E -107.2 122.5 NA NA NA
ARG D:37 D:281 26.0 0.116 E -113.3 116.6 NA NA NA
1bfs 1 P25799 99.06 2e-69 X-RAY
 1998-01-28 ARG A:37 A:281 26.0 0.116 E -104.4 122.6 26.0 0.116 0.0 HOH
 1.526
 HH12
 H2
1u3y 1 P25799 97.17 2e-69 X-RAY
 2004-08-17 ARG A:37 A:281 30.0 0.133 E -106.3 122.2 30.0 0.133 0.0 HOH
 3.102
 NH2
 O
1u3j 1 P25799 98.11 2e-68 X-RAY
 2004-08-17 ARG A:37 A:281 30.0 0.133 E -107.0 121.6 30.0 0.133 0.0 HOH
 3.056
 NH2
 O
1u42 1 P25799 97.17 4e-68 X-RAY
 2004-08-17 ARG A:37 A:281 102.0 0.453 E -103.5 134.2 30.0 0.133 0.32 A:P25799:0.32
 HOH
 4.361
 NH1
 O
1u3z 1 P25799 97.17 7e-68 X-RAY
 2004-08-17 ARG A:37 A:281 31.0 0.138 E -104.8 122.1 31.0 0.138 0.0 HOH
 3.059
 NH2
 O

AlphaFold DB

Entity Residue Monomer View
ID Entity Uniprot Identity Evalue Name Label Auth ASA rASA SS φ ψ
af-p19838-f1 1 P19838 99.9 0.0 ARG A:283 A:283 31.0 0.138 E -104.8 118.3