Variant

Genome Chromosome Position VCF ID Ref Alt mRNA Change mRNA Info
GRCh37 chr4 103504058 . A C CCDS3657.1:NM_003998.3:c.871Aat>Cat_NP_003989.2:p.291N>H Homo sapiens nuclear factor kappa B subunit 1 (NFKB1), transcript variant 1, mRNA.
pdb_id: 
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auth_asym_id: 
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alphafold_id: 
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PDB

Entity Residue Monomer BioUnit Ligand View
PDB Entity Uniprot Identity Evalue ExpMethod Date Name Label Auth ASA rASA SS φ ψ ASA rASA ΔASA Interaction Name Distance Atom(p) Atom(l)
1svc 2 P19838 99.73 0.0 X-RAY
 1996-06-10 ASN B:290 P:291 134.0 0.838 T -78.1 1.2 134.0 0.838 0.0 HOH
 8.557
 OD1
 O
2v2t 2 P25799 98.16 0.0 X-RAY
 2007-07-03 ASN B:251 B:288 164.0 1.0 T 29.7 34.1 164.0 1.0 0.0
1nfk 2 P25799 98.15 0.0 X-RAY
 1996-12-23 ASN C:250 A:288 161.0 1.0 S -67.2 71.9 161.0 1.0 0.0 HOH
 9.261
 N
 H2
ASN D:250 B:288 168.0 1.0 S -62.2 138.9 168.0 1.0 0.0 HOH
 9.030
 C
 H1
1ooa 2 P25799 98.15 0.0 X-RAY
 2003-07-22 ASN C:251 A:288 126.0 0.787 S -72.6 -148.1 126.0 0.787 0.0 HOH
 7.653
 O
 O
ASN D:251 B:288 116.0 0.725 S -109.0 -170.3 NA NA NA
2o61 4 P19838 100.0 0.0 X-RAY
 2007-07-24 ASN D:252 B:288 155.0 0.969 T 66.7 82.9 155.0 0.969 0.0
1le5 4 P25799 98.08 0.0 X-RAY
 2003-04-15 ASN F:251 B:288 177.0 1.0 S 52.8 -98.3 177.0 1.0 0.0 HOH
 5.483
 N
 O
ASN H:251 F:288 184.0 1.0 S 7.5 -76.6 NA NA NA
1le9 4 P25799 98.08 0.0 X-RAY
 2003-04-15 ASN F:251 B:288 118.0 0.738 S -69.7 62.0 118.0 0.738 0.0
ASN H:251 F:288 161.0 1.0 T -127.8 63.9 NA NA NA
1lei 4 P25799 98.08 0.0 X-RAY
 2003-04-15 ASN D:251 B:288 155.0 0.969 T -78.5 43.2 155.0 0.969 0.0
2i9t 4 P25799 98.08 0.0 X-RAY
 2007-02-06 ASN D:251 B:588 131.0 0.819 S -93.0 30.5 131.0 0.819 0.0
1vkx 4 P25799 98.08 0.0 X-RAY
 1998-12-09 ASN D:250 B:588 162.0 1.0 S -74.2 123.4 162.0 1.0 0.0
3gut 2 P19838 98.08 0.0 X-RAY
 2009-09-08 ASN B:250 B:588 140.0 0.875 S -62.1 -10.4 140.0 0.875 0.0
ASN D:250 D:588 139.0 0.869 S -70.4 -0.7 139.0 0.869 0.0
ASN F:250 F:588 142.0 0.887 S -62.8 -5.6 NA NA NA
ASN H:250 H:588 139.0 0.869 S -71.9 1.4 NA NA NA
1ikn 2 P25799 99.16 5e-80 X-RAY
 1999-04-12 ASN B:44 C:288 138.0 0.863 T -74.8 -2.0 138.0 0.863 0.0 HOH
 7.711
 N
 O
3jv4 2 P25799 99.13 4e-77 X-RAY
 2010-11-24 ASN B:44 B:288 137.0 0.856 S 162.7 -23.2 137.0 0.856 0.0
ASN D:44 D:288 135.0 0.844 S -171.2 -90.1 NA NA NA
ASN F:44 F:288 106.0 0.662 S -59.2 -139.3 NA NA NA
1nfi 2 P19838 100.0 4e-72 X-RAY
 1998-11-18 ASN B:43 B:291 138.0 0.863 T -75.4 4.6 138.0 0.863 0.0
ASN D:43 D:291 140.0 0.875 T -75.6 3.4 NA NA NA
1u36 1 P25799 97.17 3e-70 X-RAY
 2004-08-17 ASN A:44 NA:NA DO NA DO DO DO NA NA NA
1u41 1 P25799 98.11 3e-70 X-RAY
 2004-08-17 ASN A:44 A:288 121.0 NA T 83.5 9.5 121.0 NA NA HOH
 3.362
 O
 O
ASN B:44 NA:NA DO NA DO DO DO NA NA NA
ASN C:44 NA:NA DO NA DO DO DO NA NA NA
ASN D:44 NA:NA DO NA DO DO DO NA NA NA
1bfs 1 P25799 99.06 2e-69 X-RAY
 1998-01-28 ASN A:44 A:288 146.0 0.912 G -64.2 -35.3 146.0 0.912 0.0 HOH
 1.933
 HD22
 O
1u3y 1 P25799 97.17 2e-69 X-RAY
 2004-08-17 ASN A:44 NA:NA DO NA DO DO DO NA NA NA
1u3j 1 P25799 98.11 2e-68 X-RAY
 2004-08-17 ASN A:44 NA:NA DO NA DO DO DO NA NA NA
1u42 1 P25799 97.17 4e-68 X-RAY
 2004-08-17 ASN A:44 NA:NA DO NA DO DO DO NA NA NA
1u3z 1 P25799 97.17 7e-68 X-RAY
 2004-08-17 ASN A:44 A:288 133.0 0.831 T -80.3 17.7 133.0 0.831 0.0 HOH
 6.163
 OD1
 O

AlphaFold DB

Entity Residue Monomer View
ID Entity Uniprot Identity Evalue Name Label Auth ASA rASA SS φ ψ
af-p19838-f1 1 P19838 99.9 0.0 ASN A:290 A:290 118.0 0.738 T -84.4 -1.2