Variant

Genome Chromosome Position VCF ID Ref Alt mRNA Change mRNA Info
GRCh37 chr4 103504071 . G A CCDS3657.1:NM_003998.3:c.884tGg>tAg_NP_003989.2:p.295W>* Homo sapiens nuclear factor kappa B subunit 1 (NFKB1), transcript variant 1, mRNA.
pdb_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 
alphafold_id: 
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PDB

Entity Residue Monomer BioUnit Ligand View
PDB Entity Uniprot Identity Evalue ExpMethod Date Name Label Auth ASA rASA SS φ ψ ASA rASA ΔASA Interaction Name Distance Atom(p) Atom(l)
1svc 2 P19838 99.73 0.0 X-RAY
 1996-06-10 TRP B:294 P:295 28.0 0.11 E -100.4 140.0 28.0 0.11 0.0 HOH
 8.222
 CB
 O
2v2t 2 P25799 98.16 0.0 X-RAY
 2007-07-03 TRP B:255 B:292 35.0 0.137 E -76.0 149.6 35.0 0.137 0.0 HOH
 2.522
 NE1
 O
1nfk 2 P25799 98.15 0.0 X-RAY
 1996-12-23 TRP C:254 A:292 31.0 0.122 E -80.1 151.6 31.0 0.122 0.0 HOH
 3.653
 CD1
 O
TRP D:254 B:292 35.0 0.137 -119.6 129.4 35.0 0.137 0.0 HOH
 2.846
 CB
 H1
1ooa 2 P25799 98.15 0.0 X-RAY
 2003-07-22 TRP C:255 A:292 36.0 0.141 E -82.0 143.9 36.0 0.141 0.0 HOH
 3.485
 CD1
 O
TRP D:255 B:292 51.0 0.2 E -79.4 139.4 NA NA NA
2o61 4 P19838 100.0 0.0 X-RAY
 2007-07-24 TRP D:256 B:292 43.0 0.169 E -91.3 136.5 43.0 0.169 0.0
1le5 4 P25799 98.08 0.0 X-RAY
 2003-04-15 TRP F:255 B:292 44.0 0.173 E -78.1 158.8 44.0 0.173 0.0 HOH
 2.589
 NE1
 O
TRP H:255 F:292 42.0 0.165 E -90.7 149.8 NA NA NA
1le9 4 P25799 98.08 0.0 X-RAY
 2003-04-15 TRP F:255 B:292 46.0 0.18 40.9 114.8 46.0 0.18 0.0
TRP H:255 F:292 43.0 0.169 -3.3 108.9 NA NA NA
1lei 4 P25799 98.08 0.0 X-RAY
 2003-04-15 TRP D:255 B:292 46.0 0.18 E -82.2 135.6 46.0 0.18 0.0
2i9t 4 P25799 98.08 0.0 X-RAY
 2007-02-06 TRP D:255 B:592 48.0 0.188 E -102.6 146.5 48.0 0.188 0.0
1vkx 4 P25799 98.08 0.0 X-RAY
 1998-12-09 TRP D:254 B:592 39.0 0.153 E -121.4 135.5 39.0 0.153 0.0
3gut 2 P19838 98.08 0.0 X-RAY
 2009-09-08 TRP B:254 B:592 40.0 0.157 E -86.4 130.4 40.0 0.157 0.0
TRP D:254 D:592 35.0 0.137 E -84.1 122.0 35.0 0.137 0.0
TRP F:254 F:592 42.0 0.165 E -83.9 129.3 NA NA NA
TRP H:254 H:592 39.0 0.153 E -89.4 118.8 NA NA NA
1ikn 2 P25799 99.16 5e-80 X-RAY
 1999-04-12 TRP B:48 C:292 36.0 0.141 E -82.3 131.2 36.0 0.141 0.0 HOH
 5.212
 CD1
 O
3jv4 2 P25799 99.13 4e-77 X-RAY
 2010-11-24 TRP B:48 B:292 31.0 0.122 E -123.1 145.8 31.0 0.122 0.0
TRP D:48 D:292 36.0 0.141 E -114.5 156.6 NA NA NA
TRP F:48 F:292 39.0 0.153 E -107.3 154.5 NA NA NA
1nfi 2 P19838 100.0 4e-72 X-RAY
 1998-11-18 TRP B:47 B:295 40.0 0.157 E -86.9 139.5 40.0 0.157 0.0 HOH
 8.325
 C
 O
TRP D:47 D:295 41.0 0.161 E -84.9 139.3 NA NA NA
1u36 1 P25799 97.17 3e-70 X-RAY
 2004-08-17 TRP A:48 A:292 37.0 0.145 E -83.1 137.9 37.0 0.145 0.0 HOH
 3.187
 NE1
 O
1u41 1 P25799 98.11 3e-70 X-RAY
 2004-08-17 TRP A:48 A:292 50.0 0.196 E -83.8 137.3 50.0 0.196 0.0 HOH
 3.540
 NE1
 O
TRP B:48 B:292 38.0 0.149 E -84.9 131.0 38.0 0.149 0.0 HOH
 4.468
 CZ2
 O
TRP C:48 C:292 42.0 0.165 -60.2 151.4 NA NA NA
TRP D:48 D:292 36.0 0.141 E -82.8 138.5 NA NA NA
1bfs 1 P25799 99.06 2e-69 X-RAY
 1998-01-28 TRP A:48 A:292 29.0 0.114 E -84.3 147.2 29.0 0.114 0.0 HOH
 3.753
 N
 H2
1u3y 1 P25799 97.17 2e-69 X-RAY
 2004-08-17 TRP A:48 A:292 48.0 0.188 -81.3 142.3 48.0 0.188 0.0 HOH
 3.065
 NE1
 O
1u3j 1 P25799 98.11 2e-68 X-RAY
 2004-08-17 TRP A:48 A:292 44.0 0.173 E -82.5 143.8 44.0 0.173 0.0 HOH
 3.165
 NE1
 O
1u42 1 P25799 97.17 4e-68 X-RAY
 2004-08-17 TRP A:48 A:292 151.0 0.592 E -94.8 152.4 49.0 0.192 0.4 A:P25799:0.4
 HOH
 3.458
 CD1
 O
1u3z 1 P25799 97.17 7e-68 X-RAY
 2004-08-17 TRP A:48 A:292 39.0 0.153 E -70.7 141.6 39.0 0.153 0.0 HOH
 3.363
 NE1
 O

AlphaFold DB

Entity Residue Monomer View
ID Entity Uniprot Identity Evalue Name Label Auth ASA rASA SS φ ψ
af-p19838-f1 1 P19838 99.9 0.0 TRP A:294 A:294 34.0 0.133 E -70.9 136.1