Variant

Genome Chromosome Position VCF ID Ref Alt mRNA Change mRNA Info
GRCh37 chr4 103505899 . G A CCDS3657.1:NM_003998.3:c.988Gtg>Atg_NP_003989.2:p.330V>M Homo sapiens nuclear factor kappa B subunit 1 (NFKB1), transcript variant 1, mRNA.
pdb_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 
alphafold_id: 
label_asym_id: 
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label_comp_id: 
auth_asym_id: 
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PDB

Entity Residue Monomer BioUnit Ligand View
PDB Entity Uniprot Identity Evalue ExpMethod Date Name Label Auth ASA rASA SS φ ψ ASA rASA ΔASA Interaction Name Distance Atom(p) Atom(l)
1svc 2 P19838 99.73 0.0 X-RAY
 1996-06-10 VAL B:329 P:330 2.0 0.013 E -118.1 -169.1 2.0 0.013 0.0 HOH
 8.235
 CG1
 O
2v2t 2 P25799 98.16 0.0 X-RAY
 2007-07-03 VAL B:290 B:327 2.0 0.013 E -118.1 166.9 2.0 0.013 0.0 HOH
 9.850
 CG1
 O
1nfk 2 P25799 98.15 0.0 X-RAY
 1996-12-23 VAL C:289 A:327 6.0 0.039 E -141.9 -171.9 6.0 0.039 0.0 HOH
 1.710
 O
 H1
VAL D:289 B:327 0.0 0.0 E -134.2 -177.6 0.0 0.0 0.0 HOH
 5.926
 N
 H1
1ooa 2 P25799 98.15 0.0 X-RAY
 2003-07-22 VAL C:290 A:327 0.0 0.0 E -125.8 -162.8 0.0 0.0 0.0 HOH
 5.636
 N
 O
VAL D:290 B:327 2.0 0.013 E -129.9 -162.0 NA NA NA
2o61 4 P19838 100.0 0.0 X-RAY
 2007-07-24 VAL D:291 B:327 3.0 0.019 E -127.8 -168.7 3.0 0.019 0.0
1le5 4 P25799 98.08 0.0 X-RAY
 2003-04-15 VAL F:290 B:327 3.0 0.019 E -122.1 -179.7 3.0 0.019 0.0 HOH
 6.580
 O
 O
VAL H:290 F:327 2.0 0.013 E -121.5 179.9 NA NA NA
1le9 4 P25799 98.08 0.0 X-RAY
 2003-04-15 VAL F:290 B:327 4.0 0.026 E -119.6 -176.9 4.0 0.026 0.0
VAL H:290 F:327 2.0 0.013 E -117.3 -178.7 NA NA NA
1lei 4 P25799 98.08 0.0 X-RAY
 2003-04-15 VAL D:290 B:327 3.0 0.019 E -142.0 -171.6 3.0 0.019 0.0
2i9t 4 P25799 98.08 0.0 X-RAY
 2007-02-06 VAL D:290 B:627 5.0 0.032 E -143.5 -172.6 5.0 0.032 0.0
1vkx 4 P25799 98.08 0.0 X-RAY
 1998-12-09 VAL D:289 B:627 1.0 0.006 -111.3 -163.4 1.0 0.006 0.0
3gut 2 P19838 98.08 0.0 X-RAY
 2009-09-08 VAL B:289 B:627 2.0 0.013 E -114.7 -165.5 2.0 0.013 0.0
VAL D:289 D:627 3.0 0.019 E -126.4 -166.2 3.0 0.019 0.0
VAL F:289 F:627 3.0 0.019 E -124.7 -165.1 NA NA NA
VAL H:289 H:627 3.0 0.019 E -125.9 -154.2 NA NA NA
1ikn 2 P25799 99.16 5e-80 X-RAY
 1999-04-12 VAL B:83 C:327 2.0 0.013 E -128.1 -165.4 2.0 0.013 0.0 HOH
 3.589
 O
 O
3jv4 2 P25799 99.13 4e-77 X-RAY
 2010-11-24 VAL B:83 B:327 0.0 0.0 E -122.3 -159.4 0.0 0.0 0.0
VAL D:83 D:327 3.0 0.019 E -143.8 -170.5 NA NA NA
VAL F:83 F:327 1.0 0.006 E -125.3 -158.1 NA NA NA
1nfi 2 P19838 100.0 4e-72 X-RAY
 1998-11-18 VAL B:82 B:330 0.0 0.0 E -138.7 -172.2 0.0 0.0 0.0
VAL D:82 D:330 1.0 0.006 E -137.6 -174.0 NA NA NA
1u36 1 P25799 97.17 3e-70 X-RAY
 2004-08-17 VAL A:83 A:327 0.0 0.0 E -130.5 -178.4 0.0 0.0 0.0 HOH
 2.897
 O
 O
1u41 1 P25799 98.11 3e-70 X-RAY
 2004-08-17 VAL A:83 A:327 3.0 0.019 E -125.8 -174.5 3.0 0.019 0.0 HOH
 2.941
 O
 O
VAL B:83 B:327 8.0 0.052 E -128.5 -178.2 8.0 0.052 0.0 HOH
 4.767
 CG1
 O
VAL C:83 C:327 4.0 0.026 E -126.2 -174.9 NA NA NA
VAL D:83 D:327 7.0 0.045 E -124.1 176.0 NA NA NA
1bfs 1 P25799 99.06 2e-69 X-RAY
 1998-01-28 VAL A:83 A:327 4.0 0.026 E -132.7 -172.5 4.0 0.026 0.0 HOH
 2.206
 O
 H1
1u3y 1 P25799 97.17 2e-69 X-RAY
 2004-08-17 VAL A:83 A:327 0.0 0.0 E -126.5 -179.4 0.0 0.0 0.0 HOH
 2.787
 O
 O
1u3j 1 P25799 98.11 2e-68 X-RAY
 2004-08-17 VAL A:83 A:327 2.0 0.013 E -124.2 177.9 2.0 0.013 0.0 HOH
 2.951
 O
 O
1u42 1 P25799 97.17 4e-68 X-RAY
 2004-08-17 VAL A:83 A:327 45.0 0.29 E -138.9 -175.2 6.0 0.039 0.251 A:P25799:0.252
 HOH
 5.234
 N
 O
1u3z 1 P25799 97.17 7e-68 X-RAY
 2004-08-17 VAL A:83 A:327 1.0 0.006 E -131.4 -178.1 1.0 0.006 0.0 HOH
 2.698
 O
 O

AlphaFold DB

Entity Residue Monomer View
ID Entity Uniprot Identity Evalue Name Label Auth ASA rASA SS φ ψ
af-p19838-f1 1 P19838 99.9 0.0 VAL A:329 A:329 0.0 0.0 E -120.4 171.5