Variant

Genome Chromosome Position VCF ID Ref Alt mRNA Change mRNA Info
GRCh37 chr4 103505961 . C A CCDS3657.1:NM_003998.3:c.1050taC>taA_NP_003989.2:p.350Y>* Homo sapiens nuclear factor kappa B subunit 1 (NFKB1), transcript variant 1, mRNA.
pdb_id: 
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label_seq_id: 
label_comp_id: 
auth_asym_id: 
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alphafold_id: 
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PDB

Entity Residue Monomer BioUnit Ligand View
PDB Entity Uniprot Identity Evalue ExpMethod Date Name Label Auth ASA rASA SS φ ψ ASA rASA ΔASA Interaction Name Distance Atom(p) Atom(l)
1svc 2 P19838 99.73 0.0 X-RAY
 1996-06-10 TYR B:349 P:350 1.0 0.004 E -86.2 121.3 1.0 0.004 0.0
2v2t 2 P25799 98.16 0.0 X-RAY
 2007-07-03 TYR B:310 B:347 0.0 0.0 E -101.4 115.8 0.0 0.0 0.0 HOH
 7.345
 OH
 O
1nfk 2 P25799 98.15 0.0 X-RAY
 1996-12-23 TYR C:309 A:347 0.0 0.0 E -90.3 143.3 0.0 0.0 0.0 HOH
 3.510
 CE1
 H1
TYR D:309 B:347 1.0 0.004 E -81.9 144.8 1.0 0.004 0.0 HOH
 5.891
 O
 H2
1ooa 2 P25799 98.15 0.0 X-RAY
 2003-07-22 TYR C:310 A:347 0.0 0.0 E -95.7 129.2 0.0 0.0 0.0 HOH
 6.862
 O
 O
TYR D:310 B:347 0.0 0.0 E -93.8 132.2 NA NA NA
2o61 4 P19838 100.0 0.0 X-RAY
 2007-07-24 TYR D:311 B:347 0.0 0.0 E -95.2 139.2 0.0 0.0 0.0
1le5 4 P25799 98.08 0.0 X-RAY
 2003-04-15 TYR F:310 B:347 0.0 0.0 E -94.7 147.5 0.0 0.0 0.0 HOH
 7.182
 N
 O
TYR H:310 F:347 0.0 0.0 E -96.2 150.0 NA NA NA
1le9 4 P25799 98.08 0.0 X-RAY
 2003-04-15 TYR F:310 B:347 0.0 0.0 E -94.3 132.1 0.0 0.0 0.0
TYR H:310 F:347 0.0 0.0 E -92.6 131.8 NA NA NA
1lei 4 P25799 98.08 0.0 X-RAY
 2003-04-15 TYR D:310 B:347 0.0 0.0 E -105.9 124.9 0.0 0.0 0.0 HOH
 9.482
 OH
 O
2i9t 4 P25799 98.08 0.0 X-RAY
 2007-02-06 TYR D:310 B:647 0.0 0.0 E -98.8 140.8 0.0 0.0 0.0
1vkx 4 P25799 98.08 0.0 X-RAY
 1998-12-09 TYR D:309 B:647 0.0 0.0 E -59.6 77.6 0.0 0.0 0.0
3gut 2 P19838 98.08 0.0 X-RAY
 2009-09-08 TYR B:309 B:647 0.0 0.0 E -98.5 100.8 0.0 0.0 0.0
TYR D:309 D:647 0.0 0.0 E -94.9 123.0 0.0 0.0 0.0
TYR F:309 F:647 0.0 0.0 E -95.5 105.6 NA NA NA
TYR H:309 H:647 0.0 0.0 E -96.4 115.7 NA NA NA
1ikn 2 P25799 99.16 5e-80 X-RAY
 1999-04-12 TYR B:103 C:347 0.0 0.0 E -94.9 124.6 0.0 0.0 0.0 HOH
 4.286
 CE1
 O
3jv4 2 P25799 99.13 4e-77 X-RAY
 2010-11-24 TYR B:103 B:347 0.0 0.0 E -104.2 127.1 0.0 0.0 0.0
TYR D:103 D:347 0.0 0.0 E -103.1 139.8 NA NA NA
TYR F:103 F:347 0.0 0.0 E -102.6 126.4 NA NA NA
1nfi 2 P19838 100.0 4e-72 X-RAY
 1998-11-18 TYR B:102 B:350 0.0 0.0 E -97.2 119.9 0.0 0.0 0.0 HOH
 9.753
 C
 O
TYR D:102 D:350 0.0 0.0 E -96.9 117.5 NA NA NA
1u36 1 P25799 97.17 3e-70 X-RAY
 2004-08-17 TYR A:103 A:347 0.0 0.0 E -88.5 136.3 0.0 0.0 0.0 HOH
 4.302
 CE1
 O
1u41 1 P25799 98.11 3e-70 X-RAY
 2004-08-17 TYR A:103 A:347 0.0 0.0 E -87.2 126.6 0.0 0.0 0.0 HOH
 4.301
 CE1
 O
TYR B:103 B:347 0.0 0.0 E -95.2 123.6 0.0 0.0 0.0 HOH
 3.998
 CE1
 O
TYR C:103 C:347 0.0 0.0 E -84.5 133.0 NA NA NA
TYR D:103 D:347 0.0 0.0 E -90.2 125.6 NA NA NA
1bfs 1 P25799 99.06 2e-69 X-RAY
 1998-01-28 TYR A:103 A:347 0.0 0.0 E -96.8 122.5 0.0 0.0 0.0 HOH
 3.475
 CE1
 H1
1u3y 1 P25799 97.17 2e-69 X-RAY
 2004-08-17 TYR A:103 A:347 0.0 0.0 E -85.0 136.9 0.0 0.0 0.0 HOH
 4.232
 CE1
 O
1u3j 1 P25799 98.11 2e-68 X-RAY
 2004-08-17 TYR A:103 A:347 0.0 0.0 E -87.3 135.5 0.0 0.0 0.0 HOH
 4.344
 CE1
 O
1u42 1 P25799 97.17 4e-68 X-RAY
 2004-08-17 TYR A:103 A:347 44.0 0.191 E -94.9 140.6 0.0 0.0 0.191 A:P25799:0.191
 HOH
 5.961
 N
 O
1u3z 1 P25799 97.17 7e-68 X-RAY
 2004-08-17 TYR A:103 A:347 0.0 0.0 E -91.6 138.5 0.0 0.0 0.0 HOH
 4.259
 CE1
 O
7rg4 2 P19838 100.0 7e-21 X-RAY
 2021-08-25 TYR B:19 NA:NA DO NA DO DO DO NA NA NA
7rg5 2 P19838-3 100.0 7e-21 X-RAY
 2021-08-25 TYR B:19 NA:NA DO NA DO DO DO NA NA NA

AlphaFold DB

Entity Residue Monomer View
ID Entity Uniprot Identity Evalue Name Label Auth ASA rASA SS φ ψ
af-p19838-f1 1 P19838 99.9 0.0 TYR A:349 A:349 0.0 0.0 E -76.8 126.3