Variant
| Genome | Chromosome | Position | VCF ID | Ref | Alt | mRNA Change | mRNA Info | GRCh37 | chr4 | 103505963 | . | A | C | CCDS3657.1:NM_003998.3:c.1052tAt>tCt_NP_003989.2:p.351Y>S | Homo sapiens nuclear factor kappa B subunit 1 (NFKB1), transcript variant 1, mRNA. |
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PDB
| Entity | Residue | Monomer | BioUnit | Ligand | View | ||||||||||||||||||
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| PDB | Entity | Uniprot | Identity | Evalue | ExpMethod | Date | Name | Label | Auth | ASA | rASA | SS | φ | ψ | ASA | rASA | ΔASA | Interaction | Name | Distance | Atom(p) | Atom(l) | |
| 1svc | 2 | P19838 | 99.73 | 0.0 |
X-RAY |
1996-06-10 | TYR | B:350 | P:351 | 114.0 | 0.496 | E | -111.0 | 154.0 | 114.0 | 0.496 | 0.0 | ||||||
| 2v2t | 2 | P25799 | 98.16 | 0.0 |
X-RAY |
2007-07-03 | TYR | B:311 | B:348 | 98.0 | 0.426 | E | -111.8 | 135.1 | 98.0 | 0.426 | 0.0 | ||||||
| 1nfk | 2 | P25799 | 98.15 | 0.0 |
X-RAY |
1996-12-23 | TYR | C:310 | A:348 | 89.0 | 0.387 | E | -131.0 | 140.9 | 89.0 | 0.387 | 0.0 |
HOH |
1.686 |
OH |
H1 |
||
| TYR | D:310 | B:348 | 111.0 | 0.483 | E | -115.2 | 160.0 | 111.0 | 0.483 | 0.0 |
HOH |
3.527 |
CD2 |
O |
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| 1ooa | 2 | P25799 | 98.15 | 0.0 |
X-RAY |
2003-07-22 | TYR | C:311 | A:348 | 101.0 | 0.439 | E | -122.8 | 155.1 | 101.0 | 0.439 | 0.0 |
HOH |
2.548 |
OH |
O |
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| TYR | D:311 | B:348 | 93.0 | 0.404 | E | -121.8 | 158.0 | NA | NA | NA | |||||||||||||
| 2o61 | 4 | P19838 | 100.0 | 0.0 |
X-RAY |
2007-07-24 | TYR | D:312 | B:348 | 90.0 | 0.391 | E | -134.1 | 150.1 | 90.0 | 0.391 | 0.0 | ||||||
| 1le5 | 4 | P25799 | 98.08 | 0.0 |
X-RAY |
2003-04-15 | TYR | F:311 | B:348 | 90.0 | 0.391 | E | -143.1 | 157.3 | 90.0 | 0.391 | 0.0 |
HOH |
2.720 |
OH |
O |
||
| TYR | H:311 | F:348 | 97.0 | 0.422 | E | -141.8 | 152.6 | NA | NA | NA | |||||||||||||
| 1le9 | 4 | P25799 | 98.08 | 0.0 |
X-RAY |
2003-04-15 | TYR | F:311 | B:348 | 82.0 | 0.357 | E | -122.4 | 148.0 | 82.0 | 0.357 | 0.0 | ||||||
| TYR | H:311 | F:348 | 72.0 | 0.313 | E | -125.1 | 155.2 | NA | NA | NA | |||||||||||||
| 1lei | 4 | P25799 | 98.08 | 0.0 |
X-RAY |
2003-04-15 | TYR | D:311 | B:348 | 84.0 | 0.365 | E | -118.5 | 149.6 | 84.0 | 0.365 | 0.0 |
HOH |
8.663 |
OH |
O |
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| 2i9t | 4 | P25799 | 98.08 | 0.0 |
X-RAY |
2007-02-06 | TYR | D:311 | B:648 | 93.0 | 0.404 | E | -135.4 | 160.6 | 93.0 | 0.404 | 0.0 | ||||||
| 1vkx | 4 | P25799 | 98.08 | 0.0 |
X-RAY |
1998-12-09 | TYR | D:310 | B:648 | 71.0 | 0.309 | E | -66.0 | 156.7 | 71.0 | 0.309 | 0.0 | ||||||
| 3gut | 2 | P19838 | 98.08 | 0.0 |
X-RAY |
2009-09-08 | TYR | B:310 | B:648 | 78.0 | 0.339 | E | -97.4 | 146.0 | 78.0 | 0.339 | 0.0 | ||||||
| TYR | D:310 | D:648 | 68.0 | 0.296 | E | -116.9 | 155.4 | 68.0 | 0.296 | 0.0 | |||||||||||||
| TYR | F:310 | F:648 | 77.0 | 0.335 | E | -102.3 | 143.5 | NA | NA | NA | |||||||||||||
| TYR | H:310 | H:648 | 66.0 | 0.287 | E | -109.5 | 159.5 | NA | NA | NA | |||||||||||||
| 1ikn | 2 | P25799 | 99.16 | 5e-80 |
X-RAY |
1999-04-12 | TYR | B:104 | C:348 | 66.0 | 0.287 | E | -115.0 | 156.6 | 28.0 | 0.122 | 0.165 |
C:P25963:0.165 |
HOH |
4.358 |
CD1 |
O |
|
| 3jv4 | 2 | P25799 | 99.13 | 4e-77 |
X-RAY |
2010-11-24 | TYR | B:104 | B:348 | 91.0 | 0.396 | E | -125.8 | 157.6 | 91.0 | 0.396 | 0.0 | ||||||
| TYR | D:104 | D:348 | 94.0 | 0.409 | E | -126.8 | 153.0 | NA | NA | NA | |||||||||||||
| TYR | F:104 | F:348 | 87.0 | 0.378 | E | -127.0 | 149.8 | NA | NA | NA | |||||||||||||
| 1nfi | 2 | P19838 | 100.0 | 4e-72 |
X-RAY |
1998-11-18 | TYR | B:103 | B:351 | 62.0 | 0.27 | E | -104.1 | 158.3 | 26.0 | 0.113 | 0.157 |
F:P25963:0.157 |
HOH |
3.750 |
OH |
O |
|
| TYR | D:103 | D:351 | 59.0 | 0.257 | E | -101.5 | 159.0 | NA | NA | NA | |||||||||||||
| 1u36 | 1 | P25799 | 97.17 | 3e-70 |
X-RAY |
2004-08-17 | TYR | A:104 | A:348 | 75.0 | 0.326 | E | -125.2 | 155.9 | 75.0 | 0.326 | 0.0 |
HOH |
2.827 |
OH |
O |
||
| 1u41 | 1 | P25799 | 98.11 | 3e-70 |
X-RAY |
2004-08-17 | TYR | A:104 | A:348 | 75.0 | 0.326 | E | -113.1 | 148.3 | 75.0 | 0.326 | 0.0 |
HOH |
2.268 |
OH |
O |
||
| TYR | B:104 | B:348 | 92.0 | 0.4 | E | -104.2 | 154.0 | 92.0 | 0.4 | 0.0 |
HOH |
3.520 |
CD1 |
O |
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| TYR | C:104 | C:348 | 99.0 | 0.43 | E | -117.4 | 153.0 | NA | NA | NA | |||||||||||||
| TYR | D:104 | D:348 | 92.0 | 0.4 | E | -111.6 | 151.4 | NA | NA | NA | |||||||||||||
| 1bfs | 1 | P25799 | 99.06 | 2e-69 |
X-RAY |
1998-01-28 | TYR | A:104 | A:348 | 85.0 | 0.37 | E | -105.7 | 147.9 | 85.0 | 0.37 | 0.0 |
HOH |
4.376 |
HH |
H2 |
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| 1u3y | 1 | P25799 | 97.17 | 2e-69 |
X-RAY |
2004-08-17 | TYR | A:104 | A:348 | 75.0 | 0.326 | E | -123.6 | 153.1 | 75.0 | 0.326 | 0.0 |
HOH |
3.533 |
CD1 |
O |
||
| 1u3j | 1 | P25799 | 98.11 | 2e-68 |
X-RAY |
2004-08-17 | TYR | A:104 | A:348 | 76.0 | 0.33 | E | -115.4 | 150.8 | 76.0 | 0.33 | 0.0 |
HOH |
1.668 |
OH |
O |
||
| 1u42 | 1 | P25799 | 97.17 | 4e-68 |
X-RAY |
2004-08-17 | TYR | A:104 | A:348 | 180.0 | 0.783 | -126.4 | 157.6 | 80.0 | 0.348 | 0.435 |
A:P25799:0.435 |
HOH |
7.722 |
CE2 |
O |
||
| 1u3z | 1 | P25799 | 97.17 | 7e-68 |
X-RAY |
2004-08-17 | TYR | A:104 | A:348 | 77.0 | 0.335 | E | -124.6 | 152.5 | 77.0 | 0.335 | 0.0 |
HOH |
2.652 |
OH |
O |
||
| 7rg4 | 2 | P19838 | 100.0 | 7e-21 |
X-RAY |
2021-08-25 | TYR | B:20 | NA:NA | DO | NA | DO | DO | DO | NA | NA | NA | ||||||
| 7rg5 | 2 | P19838-3 | 100.0 | 7e-21 |
X-RAY |
2021-08-25 | TYR | B:20 | NA:NA | DO | NA | DO | DO | DO | NA | NA | NA | ||||||
AlphaFold DB
| Entity | Residue | Monomer | View | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ID | Entity | Uniprot | Identity | Evalue | Name | Label | Auth | ASA | rASA | SS | φ | ψ | |
| af-p19838-f1 | 1 | P19838 | 99.9 | 0.0 | TYR | A:350 | A:350 | 80.0 | 0.348 | E | -110.4 | 149.1 | |