Variant

Genome Chromosome Position VCF ID Ref Alt mRNA Change mRNA Info
GRCh37 chr4 26407808 . G A CCDS3436.1:NM_203283.2:c.65cGa>cAa_NP_976028.1:p.22R>Q Homo sapiens recombination signal binding protein for immunoglobulin kappa J region (RBPJ), transcript variant 1, mRNA.
pdb_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
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alphafold_id: 
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PDB

Entity Residue Monomer BioUnit Ligand View
PDB Entity Uniprot Identity Evalue ExpMethod Date Name Label Auth ASA rASA SS φ ψ ASA rASA ΔASA Interaction Name Distance Atom(p) Atom(l)
6py8 4 Q06330 100.0 0.0 X-RAY
 2019-08-14 ARG G:15 C:23 127.0 0.564 H -63.1 -40.0 NA NA NA
ARG H:15 E:23 115.0 0.511 H -61.7 -41.3 115.0 0.511 0.0
2f8x 3 Q06330 99.07 0.0 X-RAY
 2006-04-04 ARG C:16 C:23 116.0 0.516 H -60.1 -41.6 116.0 0.516 0.0
3v79 2 Q06330 99.07 0.0 X-RAY
 2012-02-15 ARG B:16 C:23 112.0 0.498 H -46.0 -43.3 112.0 0.498 0.0
3nbn 1 Q06330 98.84 0.0 X-RAY
 2010-11-03 ARG A:16 A:23 74.0 0.329 H -51.2 -24.5 74.0 0.329 0.0
ARG D:16 D:23 74.0 0.329 H -49.8 -25.9 74.0 0.329 0.0
6wqu 3 P31266 99.29 0.0 X-RAY
 2021-03-31 ARG C:12 C:63 123.0 0.547 H -62.1 -39.2 123.0 0.547 0.0 HOH
 5.724
 CG
 O
3iag 3 P31266 99.29 0.0 X-RAY
 2009-11-10 ARG C:11 C:63 113.0 0.502 H -58.0 -40.4 113.0 0.502 0.0 EDO
HOH
 4.507
2.751
 NH1
O
 O2
O
5eg6 2 P31266 99.29 0.0 X-RAY
 2017-04-26 ARG B:11 C:63 105.0 0.467 H -63.3 -36.9 105.0 0.467 0.0 EDO
EDO
HOH
 8.439
4.319
2.624
 NH2
NH1
O
 O1
O2
O
6dks 3 P31266 99.29 0.0 X-RAY
 2019-01-02 ARG C:11 C:63 87.0 0.387 H -58.9 -42.2 87.0 0.387 0.0
ARG G:11 G:63 98.0 0.436 H -58.8 -42.4 98.0 0.436 0.0
3brg 3 P31266 99.29 0.0 X-RAY
 2008-04-01 ARG C:16 C:63 121.0 0.538 H -52.4 -48.2 121.0 0.538 0.0 HOH
 2.844
 O
 O
4j2x 1 P31266 99.05 0.0 X-RAY
 2013-11-06 ARG A:16 A:63 92.0 0.409 H -49.8 -50.7 92.0 0.409 0.0
ARG C:16 C:63 111.0 0.493 H -54.5 -46.3 NA NA NA
5e24 3 P28159 82.62 0.0 X-RAY
 2016-06-15 GLU E:13 E:111 67.0 0.353 H -59.8 -43.6 NA NA NA
GLU F:13 F:111 68.0 0.358 H -60.2 -43.2 63.0 0.332 0.026 A:P0AEY0:0.026
 EDO
EDO
EDO
EDO
EDO
HOH
 4.631
7.582
4.764
8.047
8.604
5.427
 OE2
OE1
OE2
OE2
OE2
OE2
 O1
C2
O2
O1
O2
O

AlphaFold DB

Entity Residue Monomer View
ID Entity Uniprot Identity Evalue Name Label Auth ASA rASA SS φ ψ
af-q06330-f1 1 Q06330 100.0 0.0 ARG A:37 A:37 120.0 0.533 H -60.1 -41.8