Variant
| Genome | Chromosome | Position | VCF ID | Ref | Alt | mRNA Change | mRNA Info | GRCh37 | chr4 | 26407867 | . | C | A | CCDS3436.1:NM_203283.2:c.124Cag>Aag_NP_976028.1:p.42Q>K | Homo sapiens recombination signal binding protein for immunoglobulin kappa J region (RBPJ), transcript variant 1, mRNA. |
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PDB
| Entity | Residue | Monomer | BioUnit | Ligand | View | ||||||||||||||||||
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| PDB | Entity | Uniprot | Identity | Evalue | ExpMethod | Date | Name | Label | Auth | ASA | rASA | SS | φ | ψ | ASA | rASA | ΔASA | Interaction | Name | Distance | Atom(p) | Atom(l) | |
| 6py8 | 4 | Q06330 | 100.0 | 0.0 |
X-RAY |
2019-08-14 | GLN | G:35 | C:43 | 56.0 | 0.311 | E | -78.9 | 122.0 | NA | NA | NA | ||||||
| GLN | H:35 | E:43 | 34.0 | 0.189 | E | -80.0 | 121.4 | 34.0 | 0.189 | 0.0 |
DG DT DG DG DG DT DT DC DC |
8.963 7.423 6.783 7.655 8.334 8.318 7.058 8.140 8.513 |
OE1 OE1 CG NE2 NE2 NE2 NE2 NE2 NE2 |
C2' OP2 OP2 O6 O6 C7 C7 N4 N4 |
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| 2f8x | 3 | Q06330 | 99.07 | 0.0 |
X-RAY |
2006-04-04 | GLN | C:36 | C:43 | 43.0 | 0.239 | E | -74.5 | 114.7 | 43.0 | 0.239 | 0.0 |
DG DT DG DG DG DT DT DC DC |
9.615 7.251 6.231 7.181 7.584 8.709 6.429 7.263 8.345 |
NE2 NE2 NE2 NE2 NE2 OE1 OE1 NE2 NE2 |
C2' C2' N7 O6 O6 C2' C7 N4 N4 |
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| 3v79 | 2 | Q06330 | 99.07 | 0.0 |
X-RAY |
2012-02-15 | GLN | B:36 | C:43 | 48.0 | 0.267 | E | -91.4 | 121.7 | 48.0 | 0.267 | 0.0 |
DG DT DG DG DG DT DT DC DC |
9.705 7.331 6.258 7.380 7.969 8.285 6.506 7.564 8.886 |
NE2 NE2 NE2 NE2 NE2 OE1 OE1 OE1 NE2 |
C2' C2' N7 N7 O6 C7 C7 N4 N4 |
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| 3nbn | 1 | Q06330 | 98.84 | 0.0 |
X-RAY |
2010-11-03 | GLN | A:36 | A:43 | 47.0 | 0.261 | E | -65.8 | 134.4 | 47.0 | 0.261 | 0.0 |
DT DG DG DG DT DT DC DC |
7.482 6.089 6.720 7.862 8.318 6.307 6.724 8.835 |
NE2 NE2 NE2 OE1 OE1 OE1 OE1 OE1 |
C3' OP2 N7 O6 C7 C7 N4 N4 |
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| GLN | D:36 | D:43 | 46.0 | 0.256 | E | -67.7 | 132.2 | 46.0 | 0.256 | 0.0 |
DT DT DC DA DG DT DG DT DG |
8.838 6.561 7.337 9.054 9.900 7.807 6.829 7.678 8.173 |
OE1 OE1 OE1 OE1 OE1 NE2 NE2 OE1 OE1 |
C7 C7 N4 N6 C2' C3' O5' C7 O6 |
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| 6wqu | 3 | P31266 | 99.29 | 0.0 |
X-RAY |
2021-03-31 | GLN | C:32 | C:83 | 53.0 | 0.294 | E | -82.4 | 136.0 | 53.0 | 0.294 | 0.0 |
DT DT DC DC DC DG DT DG DG DG DA HOH |
9.010 6.692 6.969 7.767 9.741 9.487 7.251 5.854 6.896 7.419 9.896 2.778 |
NE2 NE2 NE2 NE2 NE2 NE2 NE2 NE2 NE2 NE2 NE2 O |
C7 C7 N4 N4 N4 C2' C2' N7 O6 O6 N6 O |
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| 3iag | 3 | P31266 | 99.29 | 0.0 |
X-RAY |
2009-11-10 | GLN | C:31 | C:83 | 53.0 | 0.294 | E | -81.6 | 135.6 | 53.0 | 0.294 | 0.0 |
DT DT DC DA DC DG DT DG DT DG EDO HOH |
8.719 6.565 6.995 7.468 9.871 9.750 7.347 6.207 5.228 7.709 9.076 2.654 |
OE1 OE1 OE1 OE1 OE1 OE1 OE1 NE2 OE1 OE1 O O |
C7 C7 N4 N6 N4 C2' C2' OP2 C7 O6 O2 O |
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| 5eg6 | 2 | P31266 | 99.29 | 0.0 |
X-RAY |
2017-04-26 | GLN | B:31 | C:83 | 50.0 | 0.278 | E | -83.5 | 129.9 | 50.0 | 0.278 | 0.0 |
DT DT DC DC DC DG DT DG DG DG DA EDO BU1 HOH |
8.885 6.618 6.796 7.765 9.633 9.556 7.474 5.947 6.756 7.373 9.711 9.232 9.450 2.686 |
NE2 NE2 NE2 NE2 NE2 NE2 NE2 NE2 NE2 NE2 NE2 O O O |
C7 C7 N4 N4 N4 C2' C2' N7 O6 O6 N6 O2 O5 O |
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| 6dks | 3 | P31266 | 99.29 | 0.0 |
X-RAY |
2019-01-02 | GLN | C:31 | C:83 | 48.0 | 0.267 | E | -83.2 | 132.2 | 48.0 | 0.267 | 0.0 |
DT DT DC DC DC DG DT DG DG DG DA |
9.046 6.923 6.995 7.521 9.249 9.589 6.792 4.320 6.698 7.413 9.999 |
CG NE2 NE2 NE2 NE2 NE2 OE1 OE1 NE2 NE2 NE2 |
OP2 C7 N4 N4 N4 C2' O3' OP2 O6 O6 N6 |
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| GLN | G:31 | G:83 | 50.0 | 0.278 | E | -82.8 | 132.6 | 50.0 | 0.278 | 0.0 |
DT DT DC DC DC DG DT DG DG DG DA |
9.030 6.764 6.971 7.667 9.506 9.859 7.069 4.594 6.779 7.278 9.764 |
NE2 NE2 NE2 NE2 NE2 NE2 OE1 OE1 NE2 NE2 NE2 |
C7 C7 N4 N4 N4 C2' O3' OP2 O6 O6 N6 |
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| 3brg | 3 | P31266 | 99.29 | 0.0 |
X-RAY |
2008-04-01 | GLN | C:36 | C:83 | 46.0 | 0.256 | E | -82.8 | 126.7 | 46.0 | 0.256 | 0.0 |
DT DT DC DC DC DG DT DG DG DG EDO HOH |
9.427 6.945 6.921 7.746 9.829 9.520 7.046 4.996 6.880 7.406 4.032 2.574 |
OE1 OE1 OE1 OE1 OE1 OE1 OE1 NE2 OE1 OE1 OE1 O |
C7 C7 N4 N4 N4 C2' C2' OP2 N7 O6 C1 O |
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| 4j2x | 1 | P31266 | 99.05 | 0.0 |
X-RAY |
2013-11-06 | GLN | A:36 | A:83 | 52.0 | 0.289 | E | -88.0 | 134.7 | 52.0 | 0.289 | 0.0 |
DT DT DT DC DC DT DG DG DG DA DA |
8.818 6.811 7.254 7.764 9.685 9.217 6.627 5.569 6.981 7.981 9.905 |
OE1 OE1 OE1 OE1 OE1 OE1 OE1 NE2 OE1 OE1 OE1 |
C7 C7 C7 N4 N4 C2' C2' OP2 N7 N6 N6 |
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| GLN | C:36 | C:83 | 45.0 | 0.25 | E | -90.7 | 130.0 | NA | NA | NA | |||||||||||||
| 5e24 | 3 | P28159 | 82.62 | 0.0 |
X-RAY |
2016-06-15 | GLN | E:33 | E:131 | 43.0 | 0.239 | E | -77.1 | 127.3 | NA | NA | NA | ||||||
| GLN | F:33 | F:131 | 31.0 | 0.172 | E | -83.6 | 138.5 | 31.0 | 0.172 | 0.0 |
EDO HOH |
6.149 2.881 |
N O |
O2 O |
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AlphaFold DB
| Entity | Residue | Monomer | View | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ID | Entity | Uniprot | Identity | Evalue | Name | Label | Auth | ASA | rASA | SS | φ | ψ | |
| af-q06330-f1 | 1 | Q06330 | 100.0 | 0.0 | GLN | A:57 | A:57 | 39.0 | 0.217 | E | -79.3 | 126.5 | |