wupsivus

Variant

Genome	Chromosome	Position	VCF ID	Ref	Alt	mRNA Change	mRNA Info
GRCh37	chr4	26407886	.	A	C	CCDS3436.1:NM_203283.2:c.143gAa>gCa_NP_976028.1:p.48E>A	Homo sapiens recombination signal binding protein for immunoglobulin kappa J region (RBPJ), transcript variant 1, mRNA.

pdb_id	:
label_asym_id	:
label_seq_id	:
label_comp_id	:
auth_asym_id	:
auth_seq_id	:

alphafold_id	:
label_asym_id	:
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label_comp_id	:
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PDB

Entity							Residue			Monomer					BioUnit				Ligand				View
PDB	Entity	Uniprot	Identity	Evalue	ExpMethod	Date	Name	Label	Auth	ASA	rASA	SS	φ	ψ	ASA	rASA	ΔASA	Interaction	Name	Distance	Atom(p)	Atom(l)	View
6py8	4	Q06330	100.0	0.0	X-RAY	2019-08-14	GLU	G:41	C:49	89.0	0.468		-72.4	-178.8	NA	NA	NA
6py8	4	Q06330	100.0	0.0	X-RAY	2019-08-14	GLU	H:41	E:49	86.0	0.453		-72.2	-179.9	86.0	0.453	0.0		DT DG DT DG DG DG DT DC DC DC DA	7.465 5.106 5.096 5.633 6.561 8.794 7.600 5.855 4.400 4.921 8.014	C C CB OE2 OE2 OE2 OE2 OE2 OE2 OE2 OE2	O3' OP2 C7 O6 O6 O6 C2' C6 N4 N4 N6
2f8x	3	Q06330	99.07	0.0	X-RAY	2006-04-04	GLU	C:42	C:49	78.0	0.411		-61.1	-160.7	78.0	0.411	0.0		DT DG DT DG DG DG DA DT DC DC DC DA	7.370 4.966 4.569 5.410 6.207 7.737 9.719 7.064 4.750 4.093 4.821 7.651	C C CB OE1 OE1 OE1 OE1 OE1 OE1 OE1 OE1 CG	C2' OP2 C7 O6 O6 O6 N1 C2' C5 N4 N4 N6
3v79	2	Q06330	99.07	0.0	X-RAY	2012-02-15	GLU	B:42	C:49	83.0	0.437		-58.6	-178.7	83.0	0.437	0.0		DT DG DT DG DG DG DA DT DC DC DC DA	7.386 4.979 4.602 5.250 6.420 7.953 9.752 7.332 4.303 4.028 4.623 7.662	C C CB OE1 OE1 OE1 OE1 OE1 OE1 OE1 OE1 CG	O3' OP2 C7 O6 O6 O6 N1 C2' C5 N4 N4 N6
3nbn	1	Q06330	98.84	0.0	X-RAY	2010-11-03	GLU	A:42	A:49	68.0	0.358		-67.5	-170.4	68.0	0.358	0.0		DC DT DG DT DG DG DG DT DC DC DC DA	9.743 7.305 5.125 3.297 5.488 5.921 8.191 7.698 5.096 5.148 5.389 8.480	CA CA C OE2 OE2 OE1 OE1 OE1 OE1 OE1 OE1 OE1	O3' OP2 OP2 C7 O6 O6 O6 C7 C5 N4 N4 N6
3nbn	1	Q06330	98.84	0.0	X-RAY	2010-11-03	GLU	D:42	D:49	68.0	0.358		-68.1	-169.8	68.0	0.358	0.0		DT DC DA DC DA DC DG DT DG DT DG	7.975 5.044 4.763 5.817 7.927 6.669 4.954 3.848 5.487 8.090 8.284	OE1 OE1 OE1 OE1 CB CA C CB OE1 OE1 OE1	C7 C5 N6 N4 N6 C2' OP2 C7 O6 O4 O6
6wqu	3	P31266	99.29	0.0	X-RAY	2021-03-31	GLU	C:38	C:89	70.0	0.368		-77.9	164.7	70.0	0.368	0.0		DT DC DC DC DA DC DG DT DG DG DG HOH	7.744 5.945 4.483 4.340 6.817 7.377 5.158 3.929 4.614 6.436 8.352 2.716	OE2 OE2 OE1 OE1 OE1 CA C OE1 OE1 OE1 OE1 O	C2' C5 N4 N4 N6 C2' OP2 C7 O6 O6 O6 O
3iag	3	P31266	99.29	0.0	X-RAY	2009-11-10	GLU	C:37	C:89	72.0	0.379		-64.9	159.2	72.0	0.379	0.0		DT DC DA DC DA DC DG DT DG DT DG EDO HOH	8.275 5.761 3.994 3.961 6.817 7.541 5.403 3.983 4.185 5.746 7.675 7.918 2.378	OE2 OE1 OE1 OE1 OE1 CA C OE1 OE1 OE1 OE1 O O	C7 C5 N6 N4 N6 C2' OP2 C7 O6 O4 O6 C2 O
5eg6	2	P31266	99.29	0.0	X-RAY	2017-04-26	GLU	B:37	C:89	74.0	0.389		-56.4	154.2	74.0	0.389	0.0		DT DC DC DC DA DT DG DT DG DG DG EDO BU1 HOH	8.259 5.919 4.041 3.895 6.894 7.308 5.307 4.153 4.035 5.651 7.729 2.531 7.969 2.705	OE2 OE1 OE1 OE1 OE1 CA C OE1 OE1 OE1 OE1 O O OE1	C2' C5 N4 N4 N6 C2' OP2 C7 O6 O6 O6 O2 O5 O
6dks	3	P31266	99.29	0.0	X-RAY	2019-01-02	GLU	C:37	C:89	71.0	0.374		-71.7	151.3	71.0	0.374	0.0		DT DC DC DC DA DT DG DT DG DG DG	8.087 5.918 4.576 4.259 7.346 7.394 5.336 3.747 5.015 6.587 8.692	OE2 OE2 OE1 OE1 OE1 CA C OE1 OE1 OE1 OE2	C7 C5 N4 N4 N6 C2' OP2 C7 O6 O6 O6
6dks	3	P31266	99.29	0.0	X-RAY	2019-01-02	GLU	G:37	G:89	70.0	0.368		-72.8	152.0	70.0	0.368	0.0		DT DC DC DC DA DT DG DT DG DG DG	7.950 5.745 4.365 4.155 7.282 7.541 5.364 3.800 4.843 6.274 8.372	OE2 OE2 OE1 OE1 OE1 CA C OE1 OE1 OE1 OE2	C7 C5 N4 N4 N6 C2' OP2 C7 O6 O6 O6
3brg	3	P31266	99.29	0.0	X-RAY	2008-04-01	GLU	C:42	C:89	75.0	0.395		-59.0	148.4	75.0	0.395	0.0		DT DC DC DC DA DT DG DT DG DG DG EDO HOH	7.984 5.731 3.874 4.421 6.909 7.717 5.662 3.776 4.391 5.549 7.738 4.258 2.624	OE2 OE1 OE1 OE1 OE1 CA C CG OE1 OE1 OE1 OE1 O	C2' C5 N4 N4 N6 C2' OP2 C7 O6 O6 O6 C2 O
4j2x	1	P31266	99.05	0.0	X-RAY	2013-11-06	GLU	A:42	A:89	62.0	0.326		-62.5	150.7	62.0	0.326	0.0		DT DT DC DC DC DA DG DT DG DG DG DA	7.498 4.874 4.482 4.621 7.679 9.902 6.649 4.900 4.552 4.424 6.277 8.822	OE1 OE1 OE2 OE2 OE2 OE2 CA C OE2 OE2 OE2 OE2	C2' C7 N4 N4 N4 N1 C2' OP2 N7 O6 O6 N6
4j2x	1	P31266	99.05	0.0	X-RAY	2013-11-06	GLU	C:42	C:89	70.0	0.368		-63.9	152.9	NA	NA	NA
5e24	3	P28159	82.62	0.0	X-RAY	2016-06-15	GLU	E:39	E:137	79.0	0.416		-67.1	155.8	NA	NA	NA
5e24	3	P28159	82.62	0.0	X-RAY	2016-06-15	GLU	F:39	F:137	138.0	0.726		-59.8	120.8	138.0	0.726	0.0		HOH	6.305	O	O

AlphaFold DB

Entity					Residue			Monomer					View
ID	Entity	Uniprot	Identity	Evalue	Name	Label	Auth	ASA	rASA	SS	φ	ψ	View
af-q06330-f1	1	Q06330	100.0	0.0	GLU	A:63	A:63	88.0	0.463		-64.7	142.9