wupsivus

Variant

Genome	Chromosome	Position	VCF ID	Ref	Alt	mRNA Change	mRNA Info
GRCh37	chr4	26407891	.	A	C	CCDS3436.1:NM_203283.2:c.148Agg>Cgg_NP_976028.1:p.50R>R	Homo sapiens recombination signal binding protein for immunoglobulin kappa J region (RBPJ), transcript variant 1, mRNA.

pdb_id	:
label_asym_id	:
label_seq_id	:
label_comp_id	:
auth_asym_id	:
auth_seq_id	:

alphafold_id	:
label_asym_id	:
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label_comp_id	:
auth_asym_id	:
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PDB

Entity							Residue			Monomer					BioUnit				Ligand				View
PDB	Entity	Uniprot	Identity	Evalue	ExpMethod	Date	Name	Label	Auth	ASA	rASA	SS	φ	ψ	ASA	rASA	ΔASA	Interaction	Name	Distance	Atom(p)	Atom(l)	View
6py8	4	Q06330	100.0	0.0	X-RAY	2019-08-14	ARG	G:43	C:51	102.0	0.453		-66.9	112.5	NA	NA	NA
6py8	4	Q06330	100.0	0.0	X-RAY	2019-08-14	ARG	H:43	E:51	119.0	0.529		-67.5	111.0	119.0	0.529	0.0		DT DG DT DG DG DG DA DT DC DC DC DA	7.844 4.356 3.493 3.307 3.825 6.481 9.418 7.867 5.957 3.858 5.055 8.176	N CA CA NH2 NH2 NH2 NH2 NH1 NH2 NH2 NH2 NH2	O3' C2' OP2 O6 O6 O6 N6 C7 N4 N4 N4 N1
2f8x	3	Q06330	99.07	0.0	X-RAY	2006-04-04	ARG	C:44	C:51	111.0	0.493		-97.4	92.1	111.0	0.493	0.0		DT DG DT DG DG DG DA DT DC DC DC DA	8.502 4.714 3.580 2.935 4.061 6.448 9.712 8.231 5.627 4.136 4.739 7.123	N CA CA NH2 NH2 NH2 NH2 NH1 NH2 NH2 NH2 NH2	O3' C3' OP2 O6 O6 O6 N6 C7 N4 N4 N4 N6
3v79	2	Q06330	99.07	0.0	X-RAY	2012-02-15	ARG	B:44	C:51	100.0	0.444		-90.7	92.9	100.0	0.444	0.0		DT DG DT DG DG DG DT DC DC DC DA	8.252 4.709 3.645 3.133 4.357 6.556 7.967 5.169 4.182 5.076 7.739	N CA NH1 NH2 NH2 NH2 NH2 NH2 NH2 NH2 NH2	O3' C3' C7 O6 O6 O6 C7 N4 N4 N4 N6
3nbn	1	Q06330	98.84	0.0	X-RAY	2010-11-03	ARG	A:44	A:51	115.0	0.511		-73.2	115.1	115.0	0.511	0.0		DT DG DT DG DG DG DT DC DC DC DA	8.370 4.869 3.702 2.973 4.071 6.919 7.659 5.411 4.640 5.424 7.345	N CA NH1 NH1 NH2 NH2 NH2 NH2 NH2 NH2 NH2	O3' C3' C5 N7 O6 O6 C7 N4 N4 N4 N6
3nbn	1	Q06330	98.84	0.0	X-RAY	2010-11-03	ARG	D:44	D:51	115.0	0.511		-69.9	116.2	115.0	0.511	0.0		DT DC DA DC DA DC DG DT DG DT DG	7.970 5.263 4.730 6.291 7.912 8.671 4.794 3.978 3.270 5.878 7.155	NH2 NH2 NH2 NH2 NH2 N CA CA NH1 NH1 NH2	O4 N4 N6 N4 N1 O3' C3' OP2 N7 C7 O6
6wqu	3	P31266	99.29	0.0	X-RAY	2021-03-31	ARG	C:40	C:91	113.0	0.502		-107.1	92.8	113.0	0.502	0.0		DT DC DC DC DA DC DG DT DG DG DG DA HOH	8.023 5.592 3.818 4.611 7.098 8.433 4.914 3.682 2.917 4.183 6.443 9.754 2.743	NE NH2 NH2 NH2 NH2 N CA CZ NH2 NH2 NH2 NH2 O	C7 N4 N4 N4 N6 O3' C3' C7 O6 O6 O6 N1 O
3iag	3	P31266	99.29	0.0	X-RAY	2009-11-10	ARG	C:39	C:91	112.0	0.498		-102.3	107.5	112.0	0.498	0.0		DT DC DA DC DA DC DG DT DG DT DG DA EDO HOH	7.866 5.332 3.462 4.478 6.885 8.796 4.814 3.654 2.904 3.816 6.490 9.779 8.497 2.736	NE NH2 NH2 NH2 NH2 N CA CA NH2 NH2 NH2 NH2 O O	C7 N4 N6 N4 N1 O3' C3' OP2 O6 O4 O6 N1 O1 O
5eg6	2	P31266	99.29	0.0	X-RAY	2017-04-26	ARG	B:39	C:91	109.0	0.484		-102.1	103.5	109.0	0.484	0.0		DT DC DC DC DA DT DG DT DG DG DG DA EDO BU1 HOH	8.037 5.382 3.853 4.542 7.146 8.691 4.779 3.664 2.889 4.124 6.460 9.817 6.479 8.000 2.515	NE NH2 NH2 NH2 NH2 N CA C NH1 NH2 NH2 NH2 N O O	C7 N4 N4 N4 N6 O3' C3' OP2 N7 O6 O6 N6 O2 O6 O
6dks	3	P31266	99.29	0.0	X-RAY	2019-01-02	ARG	C:39	C:91	112.0	0.498		-99.2	97.2	112.0	0.498	0.0		DT DC DC DC DA DT DG DT DG DG DG DA	8.199 5.471 3.592 4.246 7.263 8.507 4.912 3.660 3.060 4.238 6.645 9.980	NH2 NH2 NH2 NH2 NH2 N CA C NH2 NH2 NH2 NH2	C7 N4 N4 N4 N6 O3' C3' OP2 O6 O6 O6 N1
6dks	3	P31266	99.29	0.0	X-RAY	2019-01-02	ARG	G:39	G:91	112.0	0.498		-99.0	96.7	112.0	0.498	0.0		DT DC DC DC DA DT DG DT DG DG DG DA	8.079 5.336 3.610 4.452 7.424 8.537 4.986 3.694 3.073 4.014 6.334 9.645	NH2 NH2 NH2 NH2 NH2 N CA CA NH1 NH2 NH2 NH2	C7 N4 N4 N4 N6 O3' C3' OP2 N7 O6 O6 N1
3brg	3	P31266	99.29	0.0	X-RAY	2008-04-01	ARG	C:44	C:91	108.0	0.48		-103.2	99.2	108.0	0.48	0.0		DT DC DC DC DA DT DG DT DG DG DG EDO HOH	8.456 5.844 4.367 5.328 7.464 9.054 4.907 3.646 2.442 4.689 6.962 3.251 2.636	NH1 NH1 NH1 NH1 NH2 N CA CA NH2 NH1 NH1 NH1 O	C7 N4 N4 N4 N1 O3' C3' OP2 N7 O6 O6 C2 O
4j2x	1	P31266	99.05	0.0	X-RAY	2013-11-06	ARG	A:44	A:91	115.0	0.511		-85.7	82.9	115.0	0.511	0.0		DT DT DC DC DC DA DG DT DG DG DG DA DA	7.762 5.469 3.577 4.428 7.622 9.331 7.853 4.815 3.303 2.646 4.095 6.909 9.703	NE NH2 NH2 NH2 NH2 NH2 N CA NH1 NH2 NH2 NH2 NH2	C7 C7 N4 N4 N4 N1 O3' C3' C8 O6 O6 N6 N6
4j2x	1	P31266	99.05	0.0	X-RAY	2013-11-06	ARG	C:44	C:91	89.0	0.396		-84.0	95.5	NA	NA	NA
5e24	3	P28159	82.62	0.0	X-RAY	2016-06-15	ARG	E:41	E:139	107.0	0.476		-99.8	98.3	NA	NA	NA
5e24	3	P28159	82.62	0.0	X-RAY	2016-06-15	ARG	F:41	F:139	114.0	0.507		-99.2	91.8	114.0	0.507	0.0		EDO HOH	8.227 2.722	O O	O2 O

AlphaFold DB

Entity					Residue			Monomer					View
ID	Entity	Uniprot	Identity	Evalue	Name	Label	Auth	ASA	rASA	SS	φ	ψ	View
af-q06330-f1	1	Q06330	100.0	0.0	ARG	A:65	A:65	74.0	0.329		-91.1	93.6