Variant

Genome Chromosome Position VCF ID Ref Alt mRNA Change mRNA Info
GRCh37 chr4 26417098 . T A CCDS3436.1:NM_203283.2:c.151Ttt>Att_NP_976028.1:p.51F>I Homo sapiens recombination signal binding protein for immunoglobulin kappa J region (RBPJ), transcript variant 1, mRNA.
pdb_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 
alphafold_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 

PDB

Entity Residue Monomer BioUnit Ligand View
PDB Entity Uniprot Identity Evalue ExpMethod Date Name Label Auth ASA rASA SS φ ψ ASA rASA ΔASA Interaction Name Distance Atom(p) Atom(l)
6py8 4 Q06330 100.0 0.0 X-RAY
 2019-08-14 PHE G:44 C:52 83.0 0.395 -72.3 162.7 NA NA NA
PHE H:44 E:52 92.0 0.438 -74.0 162.3 92.0 0.438 0.0 DT
DG
DT
DG
 6.234
3.476
2.873
6.958
 CZ
CZ
N
O
 O3'
C5'
OP2
OP2
2f8x 3 Q06330 99.07 0.0 X-RAY
 2006-04-04 PHE C:45 C:52 71.0 0.338 -52.7 143.0 71.0 0.338 0.0 DT
DG
DT
DG
 5.648
3.486
3.423
8.332
 CZ
CZ
N
O
 O3'
O5'
OP2
OP2
3v79 2 Q06330 99.07 0.0 X-RAY
 2012-02-15 PHE B:45 C:52 76.0 0.362 -48.6 169.1 76.0 0.362 0.0 DT
DG
DT
DG
 6.081
3.542
3.717
8.347
 CZ
CZ
N
O
 O3'
C5'
OP2
OP2
3nbn 1 Q06330 98.84 0.0 X-RAY
 2010-11-03 PHE A:45 A:52 69.0 0.329 -79.5 155.6 69.0 0.329 0.0 DT
DG
DT
DG
 5.168
3.123
3.010
8.907
 CZ
CZ
N
O
 O3'
OP1
OP2
OP2
PHE D:45 D:52 69.0 0.329 -77.7 153.4 69.0 0.329 0.0 DC
DG
DT
DG
 6.199
3.806
3.415
7.590
 CZ
CZ
N
O
 O3'
OP1
OP2
OP2
6wqu 3 P31266 99.29 0.0 X-RAY
 2021-03-31 PHE C:41 C:92 64.0 0.305 -57.9 139.3 64.0 0.305 0.0 DC
DG
DT
DG
HOH
 5.630
3.489
3.078
7.908
2.712
 CZ
CE1
N
O
O
 O3'
O5'
OP2
OP2
O
3iag 3 P31266 99.29 0.0 X-RAY
 2009-11-10 PHE C:40 C:92 77.0 0.367 -73.6 148.0 77.0 0.367 0.0 DC
DG
DT
DG
EDO
HOH
 5.646
3.546
2.843
8.092
8.624
3.361
 CZ
CE1
N
O
CD2
O
 O3'
C5'
OP2
OP2
O1
O
5eg6 2 P31266 99.29 0.0 X-RAY
 2017-04-26 PHE B:40 C:92 72.0 0.343 -66.0 141.5 72.0 0.343 0.0 DT
DG
DT
DG
EDO
BU1
HOH
 5.975
3.725
2.868
7.938
8.471
7.044
2.563
 CZ
CE2
N
O
CE1
CD1
O
 O3'
C4'
OP2
OP2
C1
O6
O
6dks 3 P31266 99.29 0.0 X-RAY
 2019-01-02 PHE C:40 C:92 89.0 0.424 -66.4 139.8 89.0 0.424 0.0 DT
DG
DT
DG
 6.072
3.553
2.829
7.258
 CE2
CE2
N
O
 O3'
C5'
OP2
OP2
PHE G:40 G:92 88.0 0.419 -66.8 142.7 88.0 0.419 0.0 DT
DG
DT
DG
 5.934
3.509
2.876
7.310
 CE2
CE2
N
O
 O3'
C5'
OP2
OP2
3brg 3 P31266 99.29 0.0 X-RAY
 2008-04-01 PHE C:45 C:92 90.0 0.429 -64.1 140.0 90.0 0.429 0.0 DT
DG
DT
DG
HOH
 6.167
3.774
2.940
7.517
2.640
 CZ
CE1
N
O
O
 O3'
C4'
OP2
OP2
O
4j2x 1 P31266 99.05 0.0 X-RAY
 2013-11-06 PHE A:45 A:92 78.0 0.371 -52.2 141.3 78.0 0.371 0.0 DG
DT
DG
DG
HOH
 5.569
3.266
3.016
7.994
8.969
 CE2
CE2
N
O
CD1
 O3'
O5'
OP2
OP2
O
PHE C:45 C:92 72.0 0.343 -64.1 145.9 NA NA NA
5e24 3 P28159 82.62 0.0 X-RAY
 2016-06-15 PHE E:42 E:140 88.0 0.419 -66.6 140.2 NA NA NA
PHE F:42 F:140 88.0 0.419 -59.6 141.5 88.0 0.419 0.0 EDO
HOH
 7.003
3.849
 C
CE2
 C1
O

AlphaFold DB

Entity Residue Monomer View
ID Entity Uniprot Identity Evalue Name Label Auth ASA rASA SS φ ψ
af-q06330-f1 1 Q06330 100.0 0.0 PHE A:66 A:66 75.0 0.357 -62.5 144.9