Variant

Genome Chromosome Position VCF ID Ref Alt mRNA Change mRNA Info
GRCh37 chr4 26417129 . T A CCDS3436.1:NM_203283.2:c.182aTg>aAg_NP_976028.1:p.61M>K Homo sapiens recombination signal binding protein for immunoglobulin kappa J region (RBPJ), transcript variant 1, mRNA.
pdb_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 
alphafold_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 

PDB

Entity Residue Monomer BioUnit Ligand View
PDB Entity Uniprot Identity Evalue ExpMethod Date Name Label Auth ASA rASA SS φ ψ ASA rASA ΔASA Interaction Name Distance Atom(p) Atom(l)
6py8 4 Q06330 100.0 0.0 X-RAY
 2019-08-14 MET G:54 C:62 84.0 0.454 -75.3 162.9 NA NA NA
MET H:54 E:62 88.0 0.476 -74.6 163.2 88.0 0.476 0.0
2f8x 3 Q06330 99.07 0.0 X-RAY
 2006-04-04 MET C:55 C:62 78.0 0.422 B -80.2 172.9 78.0 0.422 0.0
3v79 2 Q06330 99.07 0.0 X-RAY
 2012-02-15 MET B:55 C:62 81.0 0.438 -68.0 172.2 81.0 0.438 0.0
3nbn 1 Q06330 98.84 0.0 X-RAY
 2010-11-03 MET A:55 A:62 96.0 0.519 -72.5 -179.6 96.0 0.519 0.0
MET D:55 D:62 95.0 0.514 -70.4 -178.0 95.0 0.514 0.0
6wqu 3 P31266 99.29 0.0 X-RAY
 2021-03-31 MET C:51 C:102 70.0 0.378 E -97.8 162.5 70.0 0.378 0.0 HOH
 5.785
 C
 O
3iag 3 P31266 99.29 0.0 X-RAY
 2009-11-10 MET C:50 C:102 78.0 0.422 E -113.9 164.9 78.0 0.422 0.0 EDO
HOH
 8.873
3.712
 O
CE
 O1
O
5eg6 2 P31266 99.29 0.0 X-RAY
 2017-04-26 MET B:50 C:102 78.0 0.422 E -100.0 157.0 78.0 0.422 0.0 EDO
EDO
BU1
BU1
BU1
HOH
 5.335
5.709
8.977
5.800
3.673
3.726
 O
C
O
N
CE
C
 C1
O1
O5
C1
O5
O
6dks 3 P31266 99.29 0.0 X-RAY
 2019-01-02 MET C:50 C:102 102.0 0.551 E -106.0 158.6 102.0 0.551 0.0
MET G:50 G:102 99.0 0.535 E -114.2 159.5 99.0 0.535 0.0
3brg 3 P31266 99.29 0.0 X-RAY
 2008-04-01 MET C:55 C:102 75.0 0.405 E -113.5 157.7 75.0 0.405 0.0 EDO
EDO
EDO
HOH
 6.991
8.825
8.430
4.280
 CE
O
CE
O
 O1
O1
O2
O
4j2x 1 P31266 99.05 0.0 X-RAY
 2013-11-06 MET A:55 A:102 87.0 0.47 E -110.7 153.3 87.0 0.47 0.0 HOH
 9.730
 O
 O
MET C:55 C:102 88.0 0.476 E -103.1 155.0 NA NA NA
5e24 3 P28159 82.62 0.0 X-RAY
 2016-06-15 PHE E:52 E:150 106.0 0.505 E -124.8 155.0 NA NA NA
PHE F:52 F:150 104.0 0.495 E -125.7 155.9 104.0 0.495 0.0 EDO
EDO
EDO
EDO
EDO
HOH
 3.743
3.968
8.963
3.689
9.676
5.647
 CG
CA
N
C
CE2
C
 C1
O2
C2
O2
O2
O

AlphaFold DB

Entity Residue Monomer View
ID Entity Uniprot Identity Evalue Name Label Auth ASA rASA SS φ ψ
af-q06330-f1 1 Q06330 100.0 0.0 MET A:76 A:76 85.0 0.459 E -114.0 157.6