Variant

Genome Chromosome Position VCF ID Ref Alt mRNA Change mRNA Info
GRCh37 chr4 26422317 . A C CCDS3436.1:NM_203283.2:c.460Aaa>Caa_NP_976028.1:p.154K>Q Homo sapiens recombination signal binding protein for immunoglobulin kappa J region (RBPJ), transcript variant 1, mRNA.
pdb_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 
alphafold_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 

PDB

Entity Residue Monomer BioUnit Ligand View
PDB Entity Uniprot Identity Evalue ExpMethod Date Name Label Auth ASA rASA SS φ ψ ASA rASA ΔASA Interaction Name Distance Atom(p) Atom(l)
6py8 4 Q06330 100.0 0.0 X-RAY
 2019-08-14 LYS G:147 C:155 92.0 0.46 -80.2 -10.7 NA NA NA
LYS H:147 E:155 130.0 0.65 -80.5 -13.7 130.0 0.65 0.0 DG
DG
DG
DA
DT
DC
DT
DT
 6.999
4.789
4.360
9.889
8.649
6.888
5.116
8.028
 NZ
NZ
NZ
NZ
C
C
N
N
 O3'
OP2
OP2
N6
C3'
OP2
OP2
C7
2f8x 3 Q06330 99.07 0.0 X-RAY
 2006-04-04 LYS C:148 C:155 151.0 0.755 -81.4 -8.6 151.0 0.755 0.0 DG
DG
DG
DA
DC
DT
DT
 7.415
5.188
4.586
9.956
8.360
6.235
7.950
 NZ
NZ
NZ
NZ
N
N
N
 O3'
OP2
OP2
N7
C3'
OP2
C7
3v79 2 Q06330 99.07 0.0 X-RAY
 2012-02-15 LYS B:148 C:155 151.0 0.755 -71.1 -10.4 151.0 0.755 0.0 DG
DG
DG
DC
DT
DT
 6.879
4.788
4.628
7.920
5.896
7.997
 NZ
NZ
NZ
N
N
N
 O3'
OP2
OP2
C3'
OP2
C7
3nbn 1 Q06330 98.84 0.0 X-RAY
 2010-11-03 LYS A:148 A:155 134.0 0.67 -76.4 88.7 134.0 0.67 0.0 DG
DG
DG
DA
DT
DC
DT
DT
DT
 6.503
4.742
5.896
8.904
7.888
5.876
5.865
7.716
8.973
 NZ
NZ
NZ
NZ
O
O
N
N
NZ
 C2'
OP2
OP2
N6
C2'
OP2
OP2
C7
O4
LYS D:148 D:155 132.0 0.66 -73.9 90.9 132.0 0.66 0.0 DA
DA
DT
DT
DT
DG
DT
DG
 7.197
5.027
5.770
8.628
9.345
7.385
5.389
6.654
 O
O
N
N
NZ
NZ
NZ
NZ
 O3'
OP2
OP2
C7
O4
O3'
OP2
OP2
6wqu 3 P31266 99.29 0.0 X-RAY
 2021-03-31 LYS C:144 C:195 182.0 0.91 S -92.1 -6.4 182.0 0.91 0.0 DT
DC
DT
DT
DT
DC
DG
DG
DG
DA
DA
HOH
 9.745
7.070
4.813
6.981
7.599
9.122
7.856
4.996
4.303
6.001
7.875
3.627
 C
N
N
N
NZ
NZ
NZ
NZ
NZ
NZ
NZ
CE
 O3'
C2'
OP2
C7
O4
N4
O3'
C2'
C8
N6
N6
O
3iag 3 P31266 99.29 0.0 X-RAY
 2009-11-10 LYS C:143 C:195 202.0 1.0 -102.6 -7.2 202.0 1.0 0.0 DT
DC
DT
DT
DT
DG
DT
DG
DA
DA
HOH
 9.246
6.915
4.708
7.270
8.868
7.165
4.392
4.001
7.854
9.434
7.467
 C
N
N
N
NZ
NZ
NZ
NZ
NZ
NZ
CG
 O3'
C2'
OP2
C7
O4
C2'
C2'
OP2
N6
N6
O
5eg6 2 P31266 99.29 0.0 X-RAY
 2017-04-26 LYS B:143 NA:NA DO NA DO DO DO NA NA NA
6dks 3 P31266 99.29 0.0 X-RAY
 2019-01-02 LYS C:143 C:195 94.0 NA -89.6 43.6 94.0 NA NA DT
DC
DT
DT
DG
DG
DA
 8.492
6.100
5.771
7.333
7.944
8.170
9.644
 O
O
N
N
CB
CB
CB
 O3'
OP2
OP2
C7
OP2
OP2
N6
LYS G:143 G:195 110.0 NA -74.6 -4.6 110.0 NA NA DT
DC
DT
DT
DT
DG
DG
DG
DA
DA
 9.636
7.415
5.569
6.533
8.737
9.813
8.154
7.251
7.709
8.490
 C
C
N
N
CB
CB
CB
CB
CB
CB
 O3'
OP2
OP2
C7
O4
C2'
OP2
N7
N6
N6
3brg 3 P31266 99.29 0.0 X-RAY
 2008-04-01 LYS C:148 C:195 110.0 0.55 -135.1 179.5 110.0 0.55 0.0 DT
DC
DT
DT
DG
DG
DG
DA
HOH
 9.303
7.122
5.815
7.740
9.921
7.513
6.811
9.047
4.074
 O
O
C
N
NZ
NZ
NZ
NZ
CB
 O3'
OP2
OP2
C7
C2'
C2'
OP2
N6
O
4j2x 1 P31266 99.05 0.0 X-RAY
 2013-11-06 LYS A:148 A:195 204.0 1.0 S -59.4 -40.5 204.0 1.0 0.0 DA
DT
DC
DT
DT
DG
DG
DA
DA
DA
 9.812
7.530
5.351
6.626
8.837
9.386
5.624
3.988
6.098
7.963
 C
C
N
N
CB
CG
CE
CE
NZ
CD
 O3'
OP2
OP2
C7
O4
C2'
C2'
OP2
OP2
N6
LYS C:148 C:195 194.0 0.97 -80.2 -10.8 NA NA NA
5e24 3 P28159 82.62 0.0 X-RAY
 2016-06-15 LYS E:145 E:243 186.0 0.93 S -76.5 -4.5 NA NA NA
LYS F:145 F:243 176.0 0.88 S -87.4 58.4 176.0 0.88 0.0 HOH
 7.160
 C
 O

AlphaFold DB

Entity Residue Monomer View
ID Entity Uniprot Identity Evalue Name Label Auth ASA rASA SS φ ψ
af-q06330-f1 1 Q06330 100.0 0.0 LYS A:169 A:169 205.0 1.0 -88.2 -18.4