Variant

Genome Chromosome Position VCF ID Ref Alt mRNA Change mRNA Info
GRCh37 chr4 140375477 . A C CCDS3747.1:NM_031296.1:c.128aAt>aCt_NP_112586.1:p.43N>T Homo sapiens RAB33B, member RAS oncogene family (RAB33B), mRNA.
pdb_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 
alphafold_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
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PDB

Entity Residue Monomer BioUnit Ligand View
PDB Entity Uniprot Identity Evalue ExpMethod Date Name Label Auth ASA rASA SS φ ψ ASA rASA ΔASA Interaction Name Distance Atom(p) Atom(l)
6zay 1 Q9H082 99.48 2e-144 X-RAY
 2020-09-30 ASN A:17 A:43 121.0 0.756 T 80.0 12.3 121.0 0.756 0.0 PEG
MG
GDP
HOH
 3.677
5.962
2.795
3.285
 ND2
N
N
ND2
 C1
MG
O3B
O
ASN C:17 B:43 132.0 0.825 T 72.4 20.9 132.0 0.825 0.0 MG
GDP
HOH
 5.883
2.828
2.879
 N
N
OD1
 MG
O3B
O
6y09 1 Q9H082 98.95 2e-143 X-RAY
 2020-09-30 ASN A:17 A:43 126.0 0.787 T 73.1 11.1 126.0 0.787 0.0 MG
GTP
PEG
HOH
 6.469
2.875
5.497
3.019
 N
N
O
OD1
 MG
O3B
O4
O
ASN C:17 B:43 129.0 0.806 T 74.3 15.0 129.0 0.806 0.0 MG
GTP
PEG
HOH
 6.417
2.763
3.310
3.012
 N
N
O
OD1
 MG
O3B
C2
O
2g77 2 O35963 98.38 1e-137 X-RAY
 2006-07-25 ASN B:39 B:43 127.0 0.794 T 81.8 7.5 48.0 0.3 0.494 A:Q08484:0.494
 MG
GDP
AF3
HOH
 6.453
2.759
3.523
2.578
 N
N
N
OD1
 MG
O1B
F3
O
1z06 1 O35963 96.13 8e-130 X-RAY
 2005-07-26 ASN A:30 A:43 125.0 0.781 T 87.6 5.0 125.0 0.781 0.0 MG
GNP
HOH
 6.413
3.160
2.848
 N
OD1
ND2
 MG
C5'
O
6sur 1 O35963 98.27 7e-129 X-RAY
 2020-08-05 ASN A:14 A:43 132.0 0.825 T 65.8 22.4 132.0 0.825 0.0 MG
GTP
 6.606
3.074
 N
N
 MG
O3B
ASN B:14 B:43 128.0 0.8 T 66.8 21.7 128.0 0.8 0.0 MG
GTP
 6.724
3.028
 N
N
 MG
O3B
ASN C:14 C:43 130.0 0.812 T 66.4 22.1 NA NA NA
ASN D:14 D:43 126.0 0.787 T 65.0 23.2 NA NA NA
ASN E:14 E:43 122.0 0.762 T 65.1 23.6 NA NA NA
ASN F:14 F:43 128.0 0.8 T 66.2 21.7 NA NA NA

AlphaFold DB

Entity Residue Monomer View
ID Entity Uniprot Identity Evalue Name Label Auth ASA rASA SS φ ψ
af-q9h082-f1 1 Q9H082 100.0 2e-176 ASN A:43 A:43 134.0 0.838 T 64.3 7.6