Variant

Genome Chromosome Position VCF ID Ref Alt mRNA Change mRNA Info
GRCh37 chr4 140375485 . A C CCDS3747.1:NM_031296.1:c.136Aag>Cag_NP_112586.1:p.46K>Q Homo sapiens RAB33B, member RAS oncogene family (RAB33B), mRNA.
pdb_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 
alphafold_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 

PDB

Entity Residue Monomer BioUnit Ligand View
PDB Entity Uniprot Identity Evalue ExpMethod Date Name Label Auth ASA rASA SS φ ψ ASA rASA ΔASA Interaction Name Distance Atom(p) Atom(l)
6zay 1 Q9H082 99.48 2e-144 X-RAY
 2020-09-30 LYS A:20 A:46 11.0 0.055 H -63.6 -44.7 11.0 0.055 0.0 MG
GDP
HOH
 5.694
2.818
3.084
 NZ
NZ
NZ
 MG
O2B
O
LYS C:20 B:46 9.0 0.045 H -66.0 -46.0 9.0 0.045 0.0 MG
GDP
HOH
 5.894
2.617
3.081
 NZ
NZ
NZ
 MG
O2B
O
6y09 1 Q9H082 98.95 2e-143 X-RAY
 2020-09-30 LYS A:20 A:46 13.0 0.065 H -63.2 -46.6 13.0 0.065 0.0 MG
GTP
HOH
 5.032
2.536
3.735
 NZ
NZ
CE
 MG
O1G
O
LYS C:20 B:46 12.0 0.06 H -61.3 -48.7 12.0 0.06 0.0 MG
GTP
PEG
HOH
 4.874
2.639
8.181
4.592
 CB
NZ
NZ
CE
 MG
O2G
O2
O
2g77 2 O35963 98.38 1e-137 X-RAY
 2006-07-25 LYS B:42 B:46 12.0 0.06 H -59.4 -40.2 12.0 0.06 0.0 MG
GDP
AF3
HOH
 4.923
2.739
2.833
3.755
 C
NZ
NZ
CE
 MG
O2B
F2
O
1z06 1 O35963 96.13 8e-130 X-RAY
 2005-07-26 LYS A:33 A:46 11.0 0.055 H -62.2 -45.9 11.0 0.055 0.0 MG
GNP
HOH
 5.017
2.705
3.933
 C
NZ
CE
 MG
O3G
O
6sur 1 O35963 98.27 7e-129 X-RAY
 2020-08-05 LYS A:17 A:46 11.0 0.055 H -64.7 -45.6 11.0 0.055 0.0 MG
GTP
 4.676
2.812
 CB
NZ
 MG
O2G
LYS B:17 B:46 10.0 0.05 H -64.6 -46.8 10.0 0.05 0.0 MG
GTP
 4.529
2.431
 CE
NZ
 MG
O1B
LYS C:17 C:46 11.0 0.055 H -64.6 -47.7 NA NA NA
LYS D:17 D:46 10.0 0.05 H -65.3 -47.6 NA NA NA
LYS E:17 E:46 11.0 0.055 H -65.7 -45.8 NA NA NA
LYS F:17 F:46 11.0 0.055 H -64.4 -46.5 NA NA NA

AlphaFold DB

Entity Residue Monomer View
ID Entity Uniprot Identity Evalue Name Label Auth ASA rASA SS φ ψ
af-q9h082-f1 1 Q9H082 100.0 2e-176 LYS A:46 A:46 9.0 0.045 H -50.4 -54.2