Variant

Genome Chromosome Position VCF ID Ref Alt mRNA Change mRNA Info
GRCh37 chr4 140393870 . C A CCDS3747.1:NM_031296.1:c.280Cga>Aga_NP_112586.1:p.94R>R Homo sapiens RAB33B, member RAS oncogene family (RAB33B), mRNA.
pdb_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 
alphafold_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 

PDB

Entity Residue Monomer BioUnit Ligand View
PDB Entity Uniprot Identity Evalue ExpMethod Date Name Label Auth ASA rASA SS φ ψ ASA rASA ΔASA Interaction Name Distance Atom(p) Atom(l)
6zay 1 Q9H082 99.48 2e-144 X-RAY
 2020-09-30 ARG A:68 A:94 173.0 0.769 H -71.1 -13.1 105.0 0.467 0.302 B:Q8C0J2:0.16
D:Q8C0J2:0.164
 HOH
 2.474
 N
 O
ARG C:68 B:94 185.0 0.822 G -65.9 -15.6 121.0 0.538 0.284 B:Q8C0J2:0.182
D:Q8C0J2:0.116
 PO4
PEG
HOH
 2.336
8.978
6.612
 NH1
N
N
 O3
C2
O
6y09 1 Q9H082 98.95 2e-143 X-RAY
 2020-09-30 ARG A:68 A:94 171.0 0.76 H -76.2 -17.1 104.0 0.462 0.298 B:Q8C0J2:0.204
D:Q8C0J2:0.138
 GTP
HOH
 8.606
2.806
 NH2
N
 O3G
O
ARG C:68 B:94 182.0 0.809 G -67.0 -23.7 123.0 0.547 0.262 B:Q8C0J2:0.16
D:Q8C0J2:0.111
 GTP
PEG
PO4
HOH
 8.375
9.173
2.709
2.695
 NH2
N
NH1
O
 O3G
C2
O3
O
2g77 2 O35963 98.38 1e-137 X-RAY
 2006-07-25 ARG B:90 B:94 191.0 0.849 H -45.8 -46.4 46.0 0.204 0.645 A:Q08484:0.644
 HOH
 2.620
 O
 O
1z06 1 O35963 96.13 8e-130 X-RAY
 2005-07-26 ARG A:81 A:94 88.0 NA H -60.7 -34.5 88.0 NA NA GNP
HOH
 9.479
3.010
 N
N
 O1G
O
6sur 1 O35963 98.27 7e-129 X-RAY
 2020-08-05 ARG A:65 A:94 193.0 0.858 G -70.7 -14.7 146.0 0.649 0.209 G:Q8C0J2:0.098
H:Q8C0J2:0.142
 GTP
 8.640
 NH2
 O3G
ARG B:65 B:94 197.0 0.876 G -67.8 -17.7 137.0 0.609 0.267 G:Q8C0J2:0.124
H:Q8C0J2:0.138
 GTP
 8.769
 NH2
 O3G
ARG C:65 C:94 232.0 1.0 G -68.7 -17.3 NA NA NA
ARG D:65 D:94 179.0 0.796 G -72.6 -15.2 NA NA NA
ARG E:65 E:94 181.0 0.804 G -68.3 -19.6 NA NA NA
ARG F:65 F:94 184.0 0.818 G -74.5 -7.9 NA NA NA

AlphaFold DB

Entity Residue Monomer View
ID Entity Uniprot Identity Evalue Name Label Auth ASA rASA SS φ ψ
af-q9h082-f1 1 Q9H082 100.0 2e-176 ARG A:94 A:94 182.0 0.809 H -57.0 -24.7