Variant

Genome Chromosome Position VCF ID Ref Alt mRNA Change mRNA Info
GRCh37 chr4 140393927 . G A CCDS3747.1:NM_031296.1:c.337Gtg>Atg_NP_112586.1:p.113V>M Homo sapiens RAB33B, member RAS oncogene family (RAB33B), mRNA.
pdb_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 
alphafold_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 

PDB

Entity Residue Monomer BioUnit Ligand View
PDB Entity Uniprot Identity Evalue ExpMethod Date Name Label Auth ASA rASA SS φ ψ ASA rASA ΔASA Interaction Name Distance Atom(p) Atom(l)
6zay 1 Q9H082 99.48 2e-144 X-RAY
 2020-09-30 VAL A:87 A:113 0.0 0.0 E -133.5 131.2 0.0 0.0 0.0 GDP
HOH
 6.532
2.642
 CG1
O
 O2B
O
VAL C:87 B:113 1.0 0.006 E -133.0 131.7 1.0 0.006 0.0 PEG
GDP
HOH
 9.628
6.418
2.754
 O
CG1
O
 O1
O2B
O
6y09 1 Q9H082 98.95 2e-143 X-RAY
 2020-09-30 VAL A:87 A:113 0.0 0.0 E -129.1 134.5 0.0 0.0 0.0 GTP
HOH
 6.467
2.745
 CG1
O
 O1B
O
VAL C:87 B:113 1.0 0.006 E -131.2 133.1 1.0 0.006 0.0 GTP
PEG
PEG
HOH
 6.343
9.748
7.629
2.843
 CG1
O
O
O
 O2B
O1
O2
O
2g77 2 O35963 98.38 1e-137 X-RAY
 2006-07-25 VAL B:109 B:113 0.0 0.0 E -132.8 134.2 0.0 0.0 0.0 MG
GDP
AF3
HOH
 9.925
6.390
9.246
2.713
 CG1
CG1
CB
O
 MG
O2B
F2
O
1z06 1 O35963 96.13 8e-130 X-RAY
 2005-07-26 VAL A:100 A:113 0.0 0.0 E -121.4 134.7 0.0 0.0 0.0 GNP
HOH
 6.574
2.816
 CG1
O
 O1B
O
6sur 1 O35963 98.27 7e-129 X-RAY
 2020-08-05 VAL A:84 A:113 2.0 0.013 E -130.0 134.3 2.0 0.013 0.0 MG
GTP
 9.785
6.596
 CG1
CG1
 MG
O1B
VAL B:84 B:113 1.0 0.006 E -128.2 134.7 1.0 0.006 0.0 MG
GTP
 9.891
6.837
 CG1
CG1
 MG
O1B
VAL C:84 C:113 2.0 0.013 E -129.0 133.7 NA NA NA
VAL D:84 D:113 1.0 0.006 E -124.1 133.4 NA NA NA
VAL E:84 E:113 1.0 0.006 E -124.1 133.7 NA NA NA
VAL F:84 F:113 2.0 0.013 E -123.7 132.4 NA NA NA

AlphaFold DB

Entity Residue Monomer View
ID Entity Uniprot Identity Evalue Name Label Auth ASA rASA SS φ ψ
af-q9h082-f1 1 Q9H082 100.0 2e-176 VAL A:113 A:113 0.0 0.0 E -124.1 131.0