Variant

Genome Chromosome Position VCF ID Ref Alt mRNA Change mRNA Info
GRCh37 chr4 140394034 . T A CCDS3747.1:NM_031296.1:c.444aaT>aaA_NP_112586.1:p.148N>K Homo sapiens RAB33B, member RAS oncogene family (RAB33B), mRNA.
pdb_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 
alphafold_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 

PDB

Entity Residue Monomer BioUnit Ligand View
PDB Entity Uniprot Identity Evalue ExpMethod Date Name Label Auth ASA rASA SS φ ψ ASA rASA ΔASA Interaction Name Distance Atom(p) Atom(l)
6zay 1 Q9H082 99.48 2e-144 X-RAY
 2020-09-30 ASN A:122 A:148 5.0 0.031 E -101.2 163.6 5.0 0.031 0.0 PEG
GDP
HOH
 7.848
3.046
6.727
 ND2
ND2
N
 O4
N7
O
ASN C:122 B:148 6.0 0.037 E -108.5 168.5 6.0 0.037 0.0 GDP
HOH
 2.994
6.793
 ND2
OD1
 N7
O
6y09 1 Q9H082 98.95 2e-143 X-RAY
 2020-09-30 ASN A:122 A:148 6.0 0.037 E -109.2 162.4 6.0 0.037 0.0 GTP
PEG
HOH
 3.104
7.347
6.595
 ND2
ND2
N
 N7
O4
O
ASN C:122 B:148 5.0 0.031 E -110.9 169.6 5.0 0.031 0.0 GTP
PEG
HOH
 3.039
8.691
6.578
 ND2
O
N
 N7
C2
O
2g77 2 O35963 98.38 1e-137 X-RAY
 2006-07-25 ASN B:144 B:148 5.0 0.031 E -115.5 171.1 5.0 0.031 0.0 GDP
HOH
 3.084
6.485
 ND2
N
 N7
O
1z06 1 O35963 96.13 8e-130 X-RAY
 2005-07-26 ASN A:135 A:148 5.0 0.031 E -107.9 167.0 5.0 0.031 0.0 GNP
HOH
 3.048
6.800
 ND2
N
 N7
O
6sur 1 O35963 98.27 7e-129 X-RAY
 2020-08-05 ASN A:119 A:148 4.0 0.025 E -102.9 172.7 4.0 0.025 0.0 MG
GTP
 9.933
3.441
 ND2
OD1
 MG
O6
ASN B:119 B:148 4.0 0.025 E -103.1 171.9 4.0 0.025 0.0 MG
GTP
 9.978
2.953
 ND2
OD1
 MG
O6
ASN C:119 C:148 5.0 0.031 E -103.8 172.9 NA NA NA
ASN D:119 D:148 3.0 0.019 E -102.9 172.0 NA NA NA
ASN E:119 E:148 3.0 0.019 E -102.7 172.2 NA NA NA
ASN F:119 F:148 4.0 0.025 E -103.4 172.8 NA NA NA

AlphaFold DB

Entity Residue Monomer View
ID Entity Uniprot Identity Evalue Name Label Auth ASA rASA SS φ ψ
af-q9h082-f1 1 Q9H082 100.0 2e-176 ASN A:148 A:148 4.0 0.025 E -93.4 162.8