Variant

Genome Chromosome Position VCF ID Ref Alt mRNA Change mRNA Info
GRCh37 chr4 25125738 . C A CCDS3432.2:NM_016955.3:c.1321Gga>Tga_NP_058651.3:p.441G>* Homo sapiens Sep (O-phosphoserine) tRNA:Sec (selenocysteine) tRNA synthase (SEPSECS), mRNA.
pdb_id: 
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label_comp_id: 
auth_asym_id: 
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alphafold_id: 
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PDB

Entity Residue Monomer BioUnit Ligand View
PDB Entity Uniprot Identity Evalue ExpMethod Date Name Label Auth ASA rASA SS φ ψ ASA rASA ΔASA Interaction Name Distance Atom(p) Atom(l)
3hl2 1 Q9HD40 100.0 0.0 X-RAY
 2009-10-06 GLY A:441 A:441 27.0 0.36 T 95.7 -25.5 27.0 0.36 0.0 HOH
 8.414
 CA
 O
GLY B:441 B:441 36.0 0.48 T 92.9 -6.9 36.0 0.48 0.0 HOH
 3.022
 N
 O
GLY C:441 C:441 28.0 0.373 T 86.1 -5.6 NA NA NA
GLY D:441 D:441 34.0 0.453 T 97.2 -14.3 NA NA NA
4zdl 1 Q9HD40 99.8 0.0 X-RAY
 2016-04-20 GLY A:441 A:441 32.0 0.427 T 92.0 -1.6 19.0 0.253 0.174 A:Q9HD40:0.173
 HOH
 2.871
 N
 O
GLY B:441 B:441 37.0 0.493 T 82.1 4.9 24.0 0.32 0.173 B:Q9HD40:0.173
 HOH
 2.818
 N
 O
4zdo 1 Q9HD40 99.8 0.0 X-RAY
 2016-04-20 GLY A:441 A:441 28.0 0.373 T 94.9 2.1 16.0 0.213 0.16 A:Q9HD40:0.16
 HOH
 2.893
 N
 O
GLY B:441 B:441 37.0 0.493 T 91.3 7.2 24.0 0.32 0.173 B:Q9HD40:0.173
 HOH
 2.938
 N
 O
GLY C:441 C:441 29.0 0.387 T 95.7 -2.1 NA NA NA
GLY D:441 D:441 35.0 0.467 T 90.7 4.8 NA NA NA
4zdp 1 Q9HD40 99.8 0.0 X-RAY
 2016-04-20 GLY A:441 A:441 30.0 0.4 T 99.7 -1.8 18.0 0.24 0.16 A:Q9HD40:0.16
 HOH
 2.961
 N
 O
GLY B:441 B:441 26.0 0.347 T 91.5 3.6 14.0 0.187 0.16 B:Q9HD40:0.16
 HOH
 3.092
 N
 O
GLY C:441 C:441 29.0 0.387 T 100.0 -5.1 NA NA NA
GLY D:441 D:441 32.0 0.427 T 91.6 5.1 NA NA NA
3bc8 1 Q6P6M7 90.2 0.0 X-RAY
 2007-12-18 GLY A:423 A:441 30.0 0.4 T 90.5 -3.1 18.0 0.24 0.16 A:Q6P6M7:0.16
 HOH
 2.618
 O
 O
3bca 1 Q6P6M7 90.2 0.0 X-RAY
 2007-12-18 GLY A:423 A:441 26.0 0.347 T 89.3 -1.6 16.0 0.213 0.134 A:Q6P6M7:0.133
 IOD
IOD
IOD
HOH
 7.297
6.547
5.562
2.774
 O
CA
O
N
 I
I
I
O
3bcb 1 Q6P6M7 90.2 0.0 X-RAY
 2007-12-18 GLY A:423 A:441 26.0 0.347 T 88.3 0.8 15.0 0.2 0.147 A:Q6P6M7:0.147
 HOH
 2.531
 O
 O

AlphaFold DB

Entity Residue Monomer View
ID Entity Uniprot Identity Evalue Name Label Auth ASA rASA SS φ ψ
af-q9hd40-f1 1 Q9HD40 100.0 0.0 GLY A:441 A:441 22.0 0.293 T 89.3 -10.4