Variant

Genome Chromosome Position VCF ID Ref Alt mRNA Change mRNA Info
GRCh37 chr4 25125768 . A C CCDS3432.2:NM_016955.3:c.1291Tgt>Ggt_NP_058651.3:p.431C>G Homo sapiens Sep (O-phosphoserine) tRNA:Sec (selenocysteine) tRNA synthase (SEPSECS), mRNA.
pdb_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 
alphafold_id: 
label_asym_id: 
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label_comp_id: 
auth_asym_id: 
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PDB

Entity Residue Monomer BioUnit Ligand View
PDB Entity Uniprot Identity Evalue ExpMethod Date Name Label Auth ASA rASA SS φ ψ ASA rASA ΔASA Interaction Name Distance Atom(p) Atom(l)
3hl2 1 Q9HD40 100.0 0.0 X-RAY
 2009-10-06 CYS A:431 A:431 14.0 0.104 S -139.9 170.8 14.0 0.104 0.0 HOH
 5.660
 O
 O
CYS B:431 B:431 9.0 0.067 S -139.4 167.1 9.0 0.067 0.0 HOH
 3.807
 CA
 O
CYS C:431 C:431 12.0 0.089 S -136.6 167.8 NA NA NA
CYS D:431 D:431 7.0 0.052 S -138.1 174.5 NA NA NA
4zdl 1 Q9HD40 99.8 0.0 X-RAY
 2016-04-20 CYS A:431 A:431 8.0 0.059 S -152.5 162.2 8.0 0.059 0.0 HOH
 3.256
 CA
 O
CYS B:431 B:431 15.0 0.111 S -154.5 162.9 15.0 0.111 0.0 HOH
 3.045
 CB
 O
4zdo 1 Q9HD40 99.8 0.0 X-RAY
 2016-04-20 CYS A:431 A:431 12.0 0.089 S -135.3 167.8 12.0 0.089 0.0 HOH
 4.675
 SG
 O
CYS B:431 B:431 20.0 0.148 S -144.2 165.2 20.0 0.148 0.0 HOH
 3.567
 O
 O
CYS C:431 C:431 21.0 0.156 S -130.1 172.5 NA NA NA
CYS D:431 D:431 7.0 0.052 S -161.3 157.2 NA NA NA
4zdp 1 Q9HD40 99.8 0.0 X-RAY
 2016-04-20 CYS A:431 A:431 13.0 0.096 S -141.5 164.5 13.0 0.096 0.0 HOH
 5.074
 N
 O
CYS B:431 B:431 10.0 0.074 S -145.2 159.6 10.0 0.074 0.0 HOH
 5.714
 N
 O
CYS C:431 C:431 11.0 0.081 S -146.5 164.7 NA NA NA
CYS D:431 D:431 8.0 0.059 S -137.4 158.1 NA NA NA
3bc8 1 Q6P6M7 90.2 0.0 X-RAY
 2007-12-18 CYS A:413 A:431 13.0 0.096 S -152.0 162.1 13.0 0.096 0.0 HOH
 2.953
 O
 O
3bca 1 Q6P6M7 90.2 0.0 X-RAY
 2007-12-18 CYS A:413 A:431 17.0 0.126 S -147.7 161.1 17.0 0.126 0.0 IOD
IOD
HOH
 8.502
3.580
2.906
 N
SG
O
 I
I
O
3bcb 1 Q6P6M7 90.2 0.0 X-RAY
 2007-12-18 CYS A:413 A:431 11.0 0.081 S -152.1 163.5 11.0 0.081 0.0 HOH
 3.554
 CA
 O

AlphaFold DB

Entity Residue Monomer View
ID Entity Uniprot Identity Evalue Name Label Auth ASA rASA SS φ ψ
af-q9hd40-f1 1 Q9HD40 100.0 0.0 CYS A:431 A:431 4.0 0.03 S -161.1 158.4