Variant

Genome Chromosome Position VCF ID Ref Alt mRNA Change mRNA Info
GRCh37 chr4 25125783 . T A CCDS3432.2:NM_016955.3:c.1276Aca>Tca_NP_058651.3:p.426T>S Homo sapiens Sep (O-phosphoserine) tRNA:Sec (selenocysteine) tRNA synthase (SEPSECS), mRNA.
pdb_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 
alphafold_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 

PDB

Entity Residue Monomer BioUnit Ligand View
PDB Entity Uniprot Identity Evalue ExpMethod Date Name Label Auth ASA rASA SS φ ψ ASA rASA ΔASA Interaction Name Distance Atom(p) Atom(l)
3hl2 1 Q9HD40 100.0 0.0 X-RAY
 2009-10-06 THR A:426 A:426 23.0 0.164 S -173.3 153.6 23.0 0.164 0.0 HOH
 3.415
 CA
 O
THR B:426 B:426 15.0 0.107 S -161.4 163.5 15.0 0.107 0.0 HOH
 2.721
 CG2
 O
THR C:426 C:426 22.0 0.157 S -165.3 151.1 NA NA NA
THR D:426 D:426 27.0 0.193 S -152.8 169.0 NA NA NA
4zdl 1 Q9HD40 99.8 0.0 X-RAY
 2016-04-20 THR A:426 A:426 18.0 0.129 S -154.8 158.3 18.0 0.129 0.0 HOH
 2.970
 OG1
 O
THR B:426 B:426 23.0 0.164 S -163.9 159.0 23.0 0.164 0.0 HOH
 2.723
 OG1
 O
4zdo 1 Q9HD40 99.8 0.0 X-RAY
 2016-04-20 THR A:426 A:426 23.0 0.164 S -161.8 157.6 23.0 0.164 0.0 HOH
 3.025
 OG1
 O
THR B:426 B:426 21.0 0.15 S -164.3 168.2 21.0 0.15 0.0 HOH
 2.392
 OG1
 O
THR C:426 C:426 22.0 0.157 S -161.9 159.4 NA NA NA
THR D:426 D:426 21.0 0.15 S -166.5 166.4 NA NA NA
4zdp 1 Q9HD40 99.8 0.0 X-RAY
 2016-04-20 THR A:426 A:426 22.0 0.157 S -164.9 159.6 22.0 0.157 0.0 HOH
 2.748
 OG1
 O
THR B:426 B:426 26.0 0.186 S -169.4 170.4 26.0 0.186 0.0 HOH
 3.370
 OG1
 O
THR C:426 C:426 24.0 0.171 S -164.8 163.5 NA NA NA
THR D:426 D:426 25.0 0.179 S -161.0 168.4 NA NA NA
3bc8 1 Q6P6M7 90.2 0.0 X-RAY
 2007-12-18 ALA A:408 A:426 12.0 0.104 S -162.5 154.0 12.0 0.104 0.0 HOH
 2.853
 O
 O
3bca 1 Q6P6M7 90.2 0.0 X-RAY
 2007-12-18 ALA A:408 A:426 11.0 0.096 S -158.4 158.1 11.0 0.096 0.0 IOD
HOH
 3.846
3.284
 CB
CA
 I
O
3bcb 1 Q6P6M7 90.2 0.0 X-RAY
 2007-12-18 ALA A:408 A:426 12.0 0.104 S -158.5 154.3 12.0 0.104 0.0 HOH
 2.993
 O
 O

AlphaFold DB

Entity Residue Monomer View
ID Entity Uniprot Identity Evalue Name Label Auth ASA rASA SS φ ψ
af-q9hd40-f1 1 Q9HD40 100.0 0.0 THR A:426 A:426 23.0 0.164 S -153.3 167.6