Variant
| Genome | Chromosome | Position | VCF ID | Ref | Alt | mRNA Change | mRNA Info | GRCh37 | chr4 | 25125818 | . | A | C | CCDS3432.2:NM_016955.3:c.1241gTg>gGg_NP_058651.3:p.414V>G | Homo sapiens Sep (O-phosphoserine) tRNA:Sec (selenocysteine) tRNA synthase (SEPSECS), mRNA. |
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PDB
| Entity | Residue | Monomer | BioUnit | Ligand | View | ||||||||||||||||||
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| PDB | Entity | Uniprot | Identity | Evalue | ExpMethod | Date | Name | Label | Auth | ASA | rASA | SS | φ | ψ | ASA | rASA | ΔASA | Interaction | Name | Distance | Atom(p) | Atom(l) | |
| 3hl2 | 1 | Q9HD40 | 100.0 | 0.0 |
X-RAY |
2009-10-06 | VAL | A:414 | A:414 | 8.0 | 0.052 | E | -132.3 | 104.9 | 8.0 | 0.052 | 0.0 |
HOH |
4.149 |
C |
O |
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| VAL | B:414 | B:414 | 8.0 | 0.052 | E | -127.2 | 106.9 | 8.0 | 0.052 | 0.0 |
HOH |
3.830 |
CA |
O |
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| VAL | C:414 | C:414 | 8.0 | 0.052 | E | -134.4 | 112.5 | NA | NA | NA | |||||||||||||
| VAL | D:414 | D:414 | 7.0 | 0.045 | E | -132.3 | 107.8 | NA | NA | NA | |||||||||||||
| 4zdl | 1 | Q9HD40 | 99.8 | 0.0 |
X-RAY |
2016-04-20 | VAL | A:414 | A:414 | 10.0 | 0.065 | E | -116.9 | 123.2 | 10.0 | 0.065 | 0.0 |
FLC HOH |
8.311 3.634 |
CG2 CA |
OA1 O |
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| VAL | B:414 | B:414 | 10.0 | 0.065 | E | -142.8 | 114.5 | 10.0 | 0.065 | 0.0 |
HOH |
4.022 |
CA |
O |
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| 4zdo | 1 | Q9HD40 | 99.8 | 0.0 |
X-RAY |
2016-04-20 | VAL | A:414 | A:414 | 8.0 | 0.052 | E | -129.7 | 109.6 | 8.0 | 0.052 | 0.0 |
PO4 HOH |
9.975 4.060 |
CG2 CA |
O3 O |
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| VAL | B:414 | B:414 | 7.0 | 0.045 | E | -122.1 | 110.3 | 7.0 | 0.045 | 0.0 |
PO4 HOH |
9.986 3.477 |
CG2 CA |
O2 O |
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| VAL | C:414 | C:414 | 9.0 | 0.058 | E | -131.5 | 112.1 | NA | NA | NA | |||||||||||||
| VAL | D:414 | D:414 | 7.0 | 0.045 | E | -113.8 | 110.6 | NA | NA | NA | |||||||||||||
| 4zdp | 1 | Q9HD40 | 99.8 | 0.0 |
X-RAY |
2016-04-20 | VAL | A:414 | A:414 | 8.0 | 0.052 | E | -131.5 | 109.3 | 8.0 | 0.052 | 0.0 |
HOH |
4.287 |
CA |
O |
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| VAL | B:414 | B:414 | 8.0 | 0.052 | E | -108.3 | 115.5 | 8.0 | 0.052 | 0.0 |
PO4 HOH |
9.740 3.755 |
CG2 CA |
O2 O |
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| VAL | C:414 | C:414 | 9.0 | 0.058 | E | -131.9 | 110.2 | NA | NA | NA | |||||||||||||
| VAL | D:414 | D:414 | 8.0 | 0.052 | E | -118.8 | 114.9 | NA | NA | NA | |||||||||||||
| 3bc8 | 1 | Q6P6M7 | 90.2 | 0.0 |
X-RAY |
2007-12-18 | VAL | A:396 | A:414 | 11.0 | 0.071 | E | -124.0 | 120.4 | 11.0 | 0.071 | 0.0 |
HOH |
3.699 |
CG1 |
O |
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| 3bca | 1 | Q6P6M7 | 90.2 | 0.0 |
X-RAY |
2007-12-18 | VAL | A:396 | A:414 | 8.0 | 0.052 | E | -116.5 | 127.5 | 8.0 | 0.052 | 0.0 |
IOD IOD IOD IOD IOD IOD HOH |
7.571 4.969 6.558 7.632 8.010 6.715 4.167 |
CG2 CG1 C O CG2 CG1 C |
I I I I I I O |
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| 3bcb | 1 | Q6P6M7 | 90.2 | 0.0 |
X-RAY |
2007-12-18 | VAL | A:396 | A:414 | 10.0 | 0.065 | E | -126.8 | 123.3 | 10.0 | 0.065 | 0.0 |
HOH |
3.865 |
CG2 |
O |
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AlphaFold DB
| Entity | Residue | Monomer | View | ||||||||||
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| ID | Entity | Uniprot | Identity | Evalue | Name | Label | Auth | ASA | rASA | SS | φ | ψ | |
| af-q9hd40-f1 | 1 | Q9HD40 | 100.0 | 0.0 | VAL | A:414 | A:414 | 9.0 | 0.058 | E | -132.8 | 116.0 | |