Variant
| Genome | Chromosome | Position | VCF ID | Ref | Alt | mRNA Change | mRNA Info | GRCh37 | chr4 | 25127383 | . | C | A | CCDS3432.2:NM_016955.3:c.1144Gaa>Taa_NP_058651.3:p.382E>* | Homo sapiens Sep (O-phosphoserine) tRNA:Sec (selenocysteine) tRNA synthase (SEPSECS), mRNA. |
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PDB
| Entity | Residue | Monomer | BioUnit | Ligand | View | ||||||||||||||||||
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| PDB | Entity | Uniprot | Identity | Evalue | ExpMethod | Date | Name | Label | Auth | ASA | rASA | SS | φ | ψ | ASA | rASA | ΔASA | Interaction | Name | Distance | Atom(p) | Atom(l) | |
| 3hl2 | 1 | Q9HD40 | 100.0 | 0.0 |
X-RAY |
2009-10-06 | GLU | A:382 | A:382 | 64.0 | 0.337 | T | -79.7 | -10.0 | 64.0 | 0.337 | 0.0 |
HOH |
9.369 |
CG |
O |
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| GLU | B:382 | B:382 | 49.0 | NA | T | -92.5 | -24.5 | 49.0 | NA | NA |
HOH |
3.823 |
N |
O |
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| GLU | C:382 | C:382 | 60.0 | 0.316 | T | -74.1 | -10.4 | NA | NA | NA | |||||||||||||
| GLU | D:382 | D:382 | 41.0 | NA | T | -96.0 | -7.9 | NA | NA | NA | |||||||||||||
| 4zdl | 1 | Q9HD40 | 99.8 | 0.0 |
X-RAY |
2016-04-20 | GLU | A:382 | A:382 | 57.0 | 0.3 | T | -63.1 | -26.6 | 57.0 | 0.3 | 0.0 |
HOH |
3.179 |
CG |
O |
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| GLU | B:382 | B:382 | 52.0 | 0.274 | T | -59.4 | -37.2 | 52.0 | 0.274 | 0.0 |
HOH |
6.270 |
C |
O |
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| 4zdo | 1 | Q9HD40 | 99.8 | 0.0 |
X-RAY |
2016-04-20 | GLU | A:382 | A:382 | 47.0 | 0.247 | T | -75.9 | -30.7 | 47.0 | 0.247 | 0.0 |
HOH |
8.891 |
CG |
O |
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| GLU | B:382 | B:382 | 43.0 | NA | S | -105.3 | -34.3 | 43.0 | NA | NA |
HOH |
6.923 |
N |
O |
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| GLU | C:382 | C:382 | 55.0 | 0.289 | T | -84.1 | -30.0 | NA | NA | NA | |||||||||||||
| GLU | D:382 | D:382 | 54.0 | NA | S | -99.3 | -37.1 | NA | NA | NA | |||||||||||||
| 4zdp | 1 | Q9HD40 | 99.8 | 0.0 |
X-RAY |
2016-04-20 | GLU | A:382 | A:382 | 58.0 | 0.305 | T | -77.1 | -28.8 | 58.0 | 0.305 | 0.0 |
HOH |
3.604 |
CG |
O |
||
| GLU | B:382 | B:382 | 46.0 | NA | S | -104.6 | -15.8 | 46.0 | NA | NA |
HOH |
9.564 |
CB |
O |
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| GLU | C:382 | C:382 | 58.0 | 0.305 | T | -82.5 | -25.5 | NA | NA | NA | |||||||||||||
| GLU | D:382 | D:382 | 52.0 | NA | T | -83.0 | -38.8 | NA | NA | NA | |||||||||||||
| 3bc8 | 1 | Q6P6M7 | 90.2 | 0.0 |
X-RAY |
2007-12-18 | GLY | A:364 | A:382 | 55.0 | 0.733 | S | 84.0 | 12.2 | 55.0 | 0.733 | 0.0 |
HOH |
3.057 |
CA |
O |
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| 3bca | 1 | Q6P6M7 | 90.2 | 0.0 |
X-RAY |
2007-12-18 | GLY | A:364 | A:382 | 56.0 | 0.747 | T | 98.3 | -7.5 | 56.0 | 0.747 | 0.0 |
IOD IOD HOH |
7.583 6.044 3.338 |
N N CA |
I I O |
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| 3bcb | 1 | Q6P6M7 | 90.2 | 0.0 |
X-RAY |
2007-12-18 | GLY | A:364 | A:382 | 56.0 | 0.747 | T | 85.6 | 4.4 | 56.0 | 0.747 | 0.0 |
HOH |
3.118 |
N |
O |
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AlphaFold DB
| Entity | Residue | Monomer | View | ||||||||||
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| ID | Entity | Uniprot | Identity | Evalue | Name | Label | Auth | ASA | rASA | SS | φ | ψ | |
| af-q9hd40-f1 | 1 | Q9HD40 | 100.0 | 0.0 | GLU | A:382 | A:382 | 141.0 | 0.742 | T | -55.1 | -17.9 | |