Variant
| Genome | Chromosome | Position | VCF ID | Ref | Alt | mRNA Change | mRNA Info | GRCh37 | chr4 | 25127404 | . | T | A | CCDS3432.2:NM_016955.3:c.1123Atg>Ttg_NP_058651.3:p.375M>L | Homo sapiens Sep (O-phosphoserine) tRNA:Sec (selenocysteine) tRNA synthase (SEPSECS), mRNA. |
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PDB
| Entity | Residue | Monomer | BioUnit | Ligand | View | ||||||||||||||||||
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| PDB | Entity | Uniprot | Identity | Evalue | ExpMethod | Date | Name | Label | Auth | ASA | rASA | SS | φ | ψ | ASA | rASA | ΔASA | Interaction | Name | Distance | Atom(p) | Atom(l) | |
| 3hl2 | 1 | Q9HD40 | 100.0 | 0.0 |
X-RAY |
2009-10-06 | MET | A:375 | A:375 | 3.0 | 0.016 | E | -105.4 | 142.4 | 3.0 | 0.016 | 0.0 |
HOH |
5.418 |
N |
O |
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| MET | B:375 | B:375 | 2.0 | 0.011 | E | -115.8 | 142.4 | 2.0 | 0.011 | 0.0 |
HOH |
5.533 |
N |
O |
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| MET | C:375 | C:375 | 2.0 | 0.011 | E | -104.3 | 138.9 | NA | NA | NA | |||||||||||||
| MET | D:375 | D:375 | 3.0 | 0.016 | E | -117.7 | 143.1 | NA | NA | NA | |||||||||||||
| 4zdl | 1 | Q9HD40 | 99.8 | 0.0 |
X-RAY |
2016-04-20 | MET | A:375 | A:375 | 3.0 | 0.016 | E | -118.5 | 135.8 | 3.0 | 0.016 | 0.0 |
HOH |
5.249 |
N |
O |
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| MET | B:375 | B:375 | 0.0 | 0.0 | E | -123.5 | 132.6 | 0.0 | 0.0 | 0.0 |
HOH |
6.980 |
CG |
O |
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| 4zdo | 1 | Q9HD40 | 99.8 | 0.0 |
X-RAY |
2016-04-20 | MET | A:375 | A:375 | 1.0 | 0.005 | E | -109.1 | 134.9 | 1.0 | 0.005 | 0.0 |
HOH |
5.932 |
N |
O |
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| MET | B:375 | B:375 | 1.0 | 0.005 | E | -121.8 | 136.6 | 1.0 | 0.005 | 0.0 |
HOH |
5.481 |
N |
O |
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| MET | C:375 | C:375 | 0.0 | 0.0 | E | -110.2 | 135.4 | NA | NA | NA | |||||||||||||
| MET | D:375 | D:375 | 1.0 | 0.005 | E | -125.0 | 136.3 | NA | NA | NA | |||||||||||||
| 4zdp | 1 | Q9HD40 | 99.8 | 0.0 |
X-RAY |
2016-04-20 | MET | A:375 | A:375 | 4.0 | 0.022 | E | -115.0 | 140.9 | 4.0 | 0.022 | 0.0 |
HOH |
5.658 |
N |
O |
||
| MET | B:375 | B:375 | 1.0 | 0.005 | E | -127.7 | 137.3 | 1.0 | 0.005 | 0.0 |
HOH |
5.428 |
N |
O |
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| MET | C:375 | C:375 | 2.0 | 0.011 | E | -110.1 | 139.2 | NA | NA | NA | |||||||||||||
| MET | D:375 | D:375 | 0.0 | 0.0 | E | -119.8 | 140.0 | NA | NA | NA | |||||||||||||
| 3bc8 | 1 | Q6P6M7 | 90.2 | 0.0 |
X-RAY |
2007-12-18 | MET | A:357 | A:375 | 0.0 | 0.0 | E | -105.8 | 149.0 | 0.0 | 0.0 | 0.0 |
HOH |
5.271 |
N |
O |
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| 3bca | 1 | Q6P6M7 | 90.2 | 0.0 |
X-RAY |
2007-12-18 | MET | A:357 | A:375 | 0.0 | 0.0 | E | -106.9 | 142.5 | 0.0 | 0.0 | 0.0 |
IOD IOD HOH |
9.045 9.001 5.213 |
C SD N |
I I O |
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| 3bcb | 1 | Q6P6M7 | 90.2 | 0.0 |
X-RAY |
2007-12-18 | MET | A:357 | A:375 | 0.0 | 0.0 | E | -108.0 | 147.6 | 0.0 | 0.0 | 0.0 |
HOH |
5.292 |
N |
O |
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AlphaFold DB
| Entity | Residue | Monomer | View | ||||||||||
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| ID | Entity | Uniprot | Identity | Evalue | Name | Label | Auth | ASA | rASA | SS | φ | ψ | |
| af-q9hd40-f1 | 1 | Q9HD40 | 100.0 | 0.0 | MET | A:375 | A:375 | 2.0 | 0.011 | E | -106.3 | 133.6 | |