Variant
| Genome | Chromosome | Position | VCF ID | Ref | Alt | mRNA Change | mRNA Info | GRCh37 | chr4 | 25128900 | . | T | A | CCDS3432.2:NM_016955.3:c.1106aAt>aTt_NP_058651.3:p.369N>I | Homo sapiens Sep (O-phosphoserine) tRNA:Sec (selenocysteine) tRNA synthase (SEPSECS), mRNA. |
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PDB
| Entity | Residue | Monomer | BioUnit | Ligand | View | ||||||||||||||||||
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| PDB | Entity | Uniprot | Identity | Evalue | ExpMethod | Date | Name | Label | Auth | ASA | rASA | SS | φ | ψ | ASA | rASA | ΔASA | Interaction | Name | Distance | Atom(p) | Atom(l) | |
| 3hl2 | 1 | Q9HD40 | 100.0 | 0.0 |
X-RAY |
2009-10-06 | ASN | A:369 | A:369 | 2.0 | 0.013 | -99.4 | 106.8 | 2.0 | 0.013 | 0.0 |
PLR TS6 C U A PLR TS6 HOH |
9.558 9.110 9.406 7.571 9.897 9.558 9.110 2.648 |
ND2 N N N N ND2 N O |
C2A O3P O3' OP1 OP2 C2A O3P O |
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| ASN | B:369 | B:369 | 3.0 | 0.019 | -105.6 | 117.0 | 3.0 | 0.019 | 0.0 |
PLR SEP PLR SEP HOH |
9.930 8.855 9.930 8.855 3.155 |
ND2 N ND2 N O |
C2A OXT C2A OXT O |
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| ASN | C:369 | C:369 | 3.0 | 0.019 | -107.7 | 108.8 | NA | NA | NA | ||||||||||||||
| ASN | D:369 | D:369 | 2.0 | 0.013 | -102.1 | 108.5 | NA | NA | NA | ||||||||||||||
| 4zdl | 1 | Q9HD40 | 99.8 | 0.0 |
X-RAY |
2016-04-20 | ASN | A:369 | A:369 | 5.0 | 0.031 | -105.3 | 108.3 | 5.0 | 0.031 | 0.0 |
HOH |
2.565 |
O |
O |
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| ASN | B:369 | B:369 | 2.0 | 0.013 | -100.4 | 109.6 | 2.0 | 0.013 | 0.0 |
HOH |
2.602 |
O |
O |
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| 4zdo | 1 | Q9HD40 | 99.8 | 0.0 |
X-RAY |
2016-04-20 | ASN | A:369 | A:369 | 3.0 | 0.019 | -101.5 | 112.4 | 3.0 | 0.019 | 0.0 |
C U HOH |
9.624 7.321 2.675 |
C N O |
OP1 OP1 O |
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| ASN | B:369 | B:369 | 3.0 | 0.019 | -104.3 | 114.2 | 3.0 | 0.019 | 0.0 |
HOH |
2.604 |
O |
O |
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| ASN | C:369 | C:369 | 3.0 | 0.019 | -101.8 | 112.4 | NA | NA | NA | ||||||||||||||
| ASN | D:369 | D:369 | 4.0 | 0.025 | -101.4 | 116.0 | NA | NA | NA | ||||||||||||||
| 4zdp | 1 | Q9HD40 | 99.8 | 0.0 |
X-RAY |
2016-04-20 | ASN | A:369 | A:369 | 3.0 | 0.019 | -97.5 | 111.6 | 3.0 | 0.019 | 0.0 |
C U PLR HOH |
9.609 7.398 9.869 2.713 |
N N ND2 O |
O3' OP1 C2A O |
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| ASN | B:369 | B:369 | 5.0 | 0.031 | -92.6 | 116.4 | 5.0 | 0.031 | 0.0 |
HOH |
2.886 |
O |
O |
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| ASN | C:369 | C:369 | 4.0 | 0.025 | -95.9 | 113.5 | NA | NA | NA | ||||||||||||||
| ASN | D:369 | D:369 | 6.0 | 0.037 | -100.5 | 115.8 | NA | NA | NA | ||||||||||||||
| 3bc8 | 1 | Q6P6M7 | 90.2 | 0.0 |
X-RAY |
2007-12-18 | ASN | A:351 | A:369 | 2.0 | 0.013 | -106.4 | 112.3 | 2.0 | 0.013 | 0.0 |
CL HOH |
7.620 2.770 |
C OD1 |
CL O |
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| 3bca | 1 | Q6P6M7 | 90.2 | 0.0 |
X-RAY |
2007-12-18 | ASN | A:351 | A:369 | 2.0 | 0.013 | -102.4 | 113.7 | 2.0 | 0.013 | 0.0 |
IOD IOD IOD IOD HOH |
9.262 7.527 7.826 6.215 2.672 |
N C O N OD1 |
I I I I O |
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| 3bcb | 1 | Q6P6M7 | 90.2 | 0.0 |
X-RAY |
2007-12-18 | ASN | A:351 | A:369 | 1.0 | 0.006 | -103.1 | 112.8 | 1.0 | 0.006 | 0.0 |
CL PO4 HOH |
7.486 9.323 2.729 |
C N O |
CL O2 O |
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AlphaFold DB
| Entity | Residue | Monomer | View | ||||||||||
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| ID | Entity | Uniprot | Identity | Evalue | Name | Label | Auth | ASA | rASA | SS | φ | ψ | |
| af-q9hd40-f1 | 1 | Q9HD40 | 100.0 | 0.0 | ASN | A:369 | A:369 | 3.0 | 0.019 | -91.5 | 111.1 | ||