Variant

Genome Chromosome Position VCF ID Ref Alt mRNA Change mRNA Info
GRCh37 chr4 25146421 . T A CCDS3432.2:NM_016955.3:c.1001tAt>tTt_NP_058651.3:p.334Y>F Homo sapiens Sep (O-phosphoserine) tRNA:Sec (selenocysteine) tRNA synthase (SEPSECS), mRNA.
pdb_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 
alphafold_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 

PDB

Entity Residue Monomer BioUnit Ligand View
PDB Entity Uniprot Identity Evalue ExpMethod Date Name Label Auth ASA rASA SS φ ψ ASA rASA ΔASA Interaction Name Distance Atom(p) Atom(l)
3hl2 1 Q9HD40 100.0 0.0 X-RAY
 2009-10-06 TYR A:334 A:334 1.0 0.004 H -62.7 -47.6 1.0 0.004 0.0 HOH
 5.087
 N
 O
TYR B:334 B:334 0.0 0.0 H -60.4 -46.9 0.0 0.0 0.0 HOH
 6.067
 CE2
 O
TYR C:334 C:334 2.0 0.009 H -65.0 -46.4 NA NA NA
TYR D:334 D:334 2.0 0.009 H -62.3 -43.9 NA NA NA
4zdl 1 Q9HD40 99.8 0.0 X-RAY
 2016-04-20 TYR A:334 A:334 0.0 0.0 H -72.0 -43.2 0.0 0.0 0.0 HOH
 4.567
 N
 O
TYR B:334 B:334 1.0 0.004 H -70.4 -41.3 1.0 0.004 0.0 HOH
 5.251
 N
 O
4zdo 1 Q9HD40 99.8 0.0 X-RAY
 2016-04-20 TYR A:334 A:334 1.0 0.004 H -71.5 -48.8 1.0 0.004 0.0 HOH
 6.115
 CE2
 O
TYR B:334 B:334 1.0 0.004 H -72.8 -46.4 1.0 0.004 0.0 HOH
 6.187
 CE2
 O
TYR C:334 C:334 1.0 0.004 H -74.9 -47.7 NA NA NA
TYR D:334 D:334 0.0 0.0 H -73.4 -46.4 NA NA NA
4zdp 1 Q9HD40 99.8 0.0 X-RAY
 2016-04-20 CYS A:334 A:334 14.0 0.104 H -73.0 -51.5 14.0 0.104 0.0 HOH
 3.662
 SG
 O
CYS B:334 B:334 14.0 0.104 H -67.9 -49.6 14.0 0.104 0.0 HOH
 3.623
 SG
 O
CYS C:334 C:334 15.0 0.111 H -77.6 -49.1 NA NA NA
CYS D:334 D:334 15.0 0.111 H -68.0 -49.1 NA NA NA
3bc8 1 Q6P6M7 90.2 0.0 X-RAY
 2007-12-18 TYR A:316 A:334 2.0 0.009 H -66.1 -47.0 2.0 0.009 0.0 HOH
 4.866
 N
 O
3bca 1 Q6P6M7 90.2 0.0 X-RAY
 2007-12-18 TYR A:316 A:334 1.0 0.004 H -67.7 -42.3 1.0 0.004 0.0 IOD
IOD
IOD
IOD
IOD
IOD
HOH
 7.541
7.285
7.647
6.314
7.976
8.397
4.888
 CB
C
N
N
N
N
N
 I
I
I
I
I
I
O
3bcb 1 Q6P6M7 90.2 0.0 X-RAY
 2007-12-18 TYR A:316 A:334 2.0 0.009 H -67.5 -46.1 2.0 0.009 0.0 HOH
 4.712
 N
 O

AlphaFold DB

Entity Residue Monomer View
ID Entity Uniprot Identity Evalue Name Label Auth ASA rASA SS φ ψ
af-q9hd40-f1 1 Q9HD40 100.0 0.0 TYR A:334 A:334 0.0 0.0 H -65.4 -45.5