Variant

Genome Chromosome Position VCF ID Ref Alt mRNA Change mRNA Info
GRCh37 chr4 25146424 . C A CCDS3432.2:NM_016955.3:c.998gGc>gTc_NP_058651.3:p.333G>V Homo sapiens Sep (O-phosphoserine) tRNA:Sec (selenocysteine) tRNA synthase (SEPSECS), mRNA.
pdb_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 
alphafold_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 

PDB

Entity Residue Monomer BioUnit Ligand View
PDB Entity Uniprot Identity Evalue ExpMethod Date Name Label Auth ASA rASA SS φ ψ ASA rASA ΔASA Interaction Name Distance Atom(p) Atom(l)
3hl2 1 Q9HD40 100.0 0.0 X-RAY
 2009-10-06 GLY A:333 A:333 17.0 0.227 H -49.5 -47.5 17.0 0.227 0.0 HOH
 3.115
 O
 O
GLY B:333 B:333 18.0 0.24 H -49.1 -56.6 18.0 0.24 0.0 HOH
 7.585
 O
 O
GLY C:333 C:333 18.0 0.24 H -50.7 -46.9 NA NA NA
GLY D:333 D:333 19.0 0.253 H -55.0 -52.0 NA NA NA
4zdl 1 Q9HD40 99.8 0.0 X-RAY
 2016-04-20 GLY A:333 A:333 18.0 0.24 H -58.9 -38.5 18.0 0.24 0.0 HOH
 2.542
 O
 O
GLY B:333 B:333 17.0 0.227 H -63.5 -38.5 17.0 0.227 0.0 HOH
 3.259
 O
 O
4zdo 1 Q9HD40 99.8 0.0 X-RAY
 2016-04-20 GLY A:333 A:333 18.0 0.24 H -66.1 -33.1 18.0 0.24 0.0 HOH
 7.657
 O
 O
GLY B:333 B:333 18.0 0.24 H -70.1 -35.0 18.0 0.24 0.0 HOH
 4.127
 CA
 O
GLY C:333 C:333 17.0 0.227 H -67.7 -30.2 NA NA NA
GLY D:333 D:333 19.0 0.253 H -67.0 -37.9 NA NA NA
4zdp 1 Q9HD40 99.8 0.0 X-RAY
 2016-04-20 GLY A:333 A:333 18.0 0.24 H -62.8 -30.5 18.0 0.24 0.0 HOH
 6.474
 O
 O
GLY B:333 B:333 17.0 0.227 H -52.6 -47.4 17.0 0.227 0.0 HOH
 3.793
 CA
 O
GLY C:333 C:333 16.0 0.213 H -64.4 -26.5 NA NA NA
GLY D:333 D:333 17.0 0.227 H -65.8 -37.4 NA NA NA
3bc8 1 Q6P6M7 90.2 0.0 X-RAY
 2007-12-18 GLY A:315 A:333 16.0 0.213 H -67.0 -42.4 16.0 0.213 0.0 HOH
 2.923
 O
 O
3bca 1 Q6P6M7 90.2 0.0 X-RAY
 2007-12-18 GLY A:315 A:333 17.0 0.227 H -70.9 -43.4 17.0 0.227 0.0 IOD
IOD
IOD
IOD
IOD
IOD
HOH
 9.270
7.230
6.148
3.970
6.520
7.778
2.906
 N
O
N
CA
O
CA
O
 I
I
I
I
I
I
O
3bcb 1 Q6P6M7 90.2 0.0 X-RAY
 2007-12-18 GLY A:315 A:333 15.0 0.2 H -58.2 -43.8 15.0 0.2 0.0 HOH
 2.710
 O
 O

AlphaFold DB

Entity Residue Monomer View
ID Entity Uniprot Identity Evalue Name Label Auth ASA rASA SS φ ψ
af-q9hd40-f1 1 Q9HD40 100.0 0.0 GLY A:333 A:333 19.0 0.253 H -61.9 -42.8