Variant

Genome Chromosome Position VCF ID Ref Alt mRNA Change mRNA Info
GRCh37 chr4 25146430 . G A CCDS3432.2:NM_016955.3:c.992tCa>tTa_NP_058651.3:p.331S>L Homo sapiens Sep (O-phosphoserine) tRNA:Sec (selenocysteine) tRNA synthase (SEPSECS), mRNA.
pdb_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 
alphafold_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 

PDB

Entity Residue Monomer BioUnit Ligand View
PDB Entity Uniprot Identity Evalue ExpMethod Date Name Label Auth ASA rASA SS φ ψ ASA rASA ΔASA Interaction Name Distance Atom(p) Atom(l)
3hl2 1 Q9HD40 100.0 0.0 X-RAY
 2009-10-06 SER A:331 A:331 11.0 0.096 H -60.8 -32.7 11.0 0.096 0.0 U
U
HOH
 8.580
9.228
2.770
 OG
OG
OG
 OP1
C4'
O
SER B:331 B:331 16.0 0.139 H -44.3 -53.4 16.0 0.139 0.0
SER C:331 C:331 9.0 0.078 H -62.3 -32.3 NA NA NA
SER D:331 D:331 13.0 0.113 H -49.4 -40.2 NA NA NA
4zdl 1 Q9HD40 99.8 0.0 X-RAY
 2016-04-20 SER A:331 A:331 13.0 0.113 H -63.1 -34.8 13.0 0.113 0.0 HOH
 3.399
 OG
 O
SER B:331 B:331 8.0 0.07 H -65.0 -31.8 8.0 0.07 0.0 HOH
 6.101
 OG
 O
4zdo 1 Q9HD40 99.8 0.0 X-RAY
 2016-04-20 SER A:331 A:331 19.0 0.165 H -65.7 -23.6 19.0 0.165 0.0 U
U
HOH
 8.922
9.355
6.399
 OG
OG
OG
 OP1
C4'
O
SER B:331 B:331 17.0 0.148 H -66.0 -34.4 17.0 0.148 0.0 HOH
 3.237
 OG
 O
SER C:331 C:331 11.0 0.096 H -64.7 -29.1 NA NA NA
SER D:331 D:331 17.0 0.148 H -51.7 -51.0 NA NA NA
4zdp 1 Q9HD40 99.8 0.0 X-RAY
 2016-04-20 SER A:331 A:331 12.0 0.104 H -70.8 -23.3 12.0 0.104 0.0 U
U
HOH
 8.705
9.480
2.995
 OG
OG
OG
 OP1
C4'
O
SER B:331 B:331 14.0 0.122 H -42.6 -62.1 14.0 0.122 0.0 HOH
 6.606
 N
 O
SER C:331 C:331 17.0 0.148 H -73.0 -20.6 NA NA NA
SER D:331 D:331 15.0 0.13 H -61.5 -39.9 NA NA NA
3bc8 1 Q6P6M7 90.2 0.0 X-RAY
 2007-12-18 CYS A:313 A:331 15.0 0.111 H -55.5 -44.6 15.0 0.111 0.0 HOH
 3.795
 SG
 O
3bca 1 Q6P6M7 90.2 0.0 X-RAY
 2007-12-18 CYS A:313 A:331 15.0 0.111 H -55.5 -49.6 15.0 0.111 0.0 IOD
IOD
IOD
IOD
IOD
IOD
HOH
 2.926
9.551
7.389
3.840
6.850
8.392
3.913
 SG
SG
O
CB
C
SG
SG
 I
I
I
I
I
I
O
3bcb 1 Q6P6M7 90.2 0.0 X-RAY
 2007-12-18 CYS A:313 A:331 15.0 0.111 H -56.0 -43.6 15.0 0.111 0.0 HOH
 3.875
 CB
 O

AlphaFold DB

Entity Residue Monomer View
ID Entity Uniprot Identity Evalue Name Label Auth ASA rASA SS φ ψ
af-q9hd40-f1 1 Q9HD40 100.0 0.0 SER A:331 A:331 11.0 0.096 H -64.1 -33.0