Variant
| Genome | Chromosome | Position | VCF ID | Ref | Alt | mRNA Change | mRNA Info | GRCh37 | chr4 | 25146641 | . | T | A | CCDS3432.2:NM_016955.3:c.919Agc>Tgc_NP_058651.3:p.307S>C | Homo sapiens Sep (O-phosphoserine) tRNA:Sec (selenocysteine) tRNA synthase (SEPSECS), mRNA. |
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PDB
| Entity | Residue | Monomer | BioUnit | Ligand | View | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| PDB | Entity | Uniprot | Identity | Evalue | ExpMethod | Date | Name | Label | Auth | ASA | rASA | SS | φ | ψ | ASA | rASA | ΔASA | Interaction | Name | Distance | Atom(p) | Atom(l) | |
| 3hl2 | 1 | Q9HD40 | 100.0 | 0.0 |
X-RAY |
2009-10-06 | SER | A:307 | A:307 | 0.0 | 0.0 | H | -53.4 | -48.4 | 0.0 | 0.0 | 0.0 |
HOH |
6.531 |
OG |
O |
||
| SER | B:307 | B:307 | 2.0 | 0.017 | H | -63.8 | -39.6 | 2.0 | 0.017 | 0.0 |
HOH |
5.762 |
C |
O |
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| SER | C:307 | C:307 | 3.0 | 0.026 | H | -56.0 | -47.6 | NA | NA | NA | |||||||||||||
| SER | D:307 | D:307 | 7.0 | 0.061 | H | -64.1 | -49.1 | NA | NA | NA | |||||||||||||
| 4zdl | 1 | Q9HD40 | 99.8 | 0.0 |
X-RAY |
2016-04-20 | SER | A:307 | A:307 | 5.0 | 0.043 | H | -61.8 | -49.1 | 5.0 | 0.043 | 0.0 |
HOH |
3.057 |
O |
O |
||
| SER | B:307 | B:307 | 5.0 | 0.043 | H | -49.4 | -54.0 | 5.0 | 0.043 | 0.0 |
HOH |
5.865 |
C |
O |
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| 4zdo | 1 | Q9HD40 | 99.8 | 0.0 |
X-RAY |
2016-04-20 | SER | A:307 | A:307 | 6.0 | 0.052 | H | -63.3 | -44.7 | 6.0 | 0.052 | 0.0 |
HOH |
4.089 |
CB |
O |
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| SER | B:307 | B:307 | 6.0 | 0.052 | H | -63.0 | -43.2 | 6.0 | 0.052 | 0.0 |
HOH |
3.057 |
O |
O |
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| SER | C:307 | C:307 | 4.0 | 0.035 | H | -57.3 | -48.3 | NA | NA | NA | |||||||||||||
| SER | D:307 | D:307 | 6.0 | 0.052 | H | -64.3 | -44.7 | NA | NA | NA | |||||||||||||
| 4zdp | 1 | Q9HD40 | 99.8 | 0.0 |
X-RAY |
2016-04-20 | SER | A:307 | A:307 | 6.0 | 0.052 | H | -57.3 | -44.6 | 6.0 | 0.052 | 0.0 |
HOH |
4.796 |
OG |
O |
||
| SER | B:307 | B:307 | 1.0 | 0.009 | H | -64.6 | -49.2 | 1.0 | 0.009 | 0.0 |
HOH |
3.034 |
O |
O |
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| SER | C:307 | C:307 | 2.0 | 0.017 | H | -53.7 | -46.7 | NA | NA | NA | |||||||||||||
| SER | D:307 | D:307 | 5.0 | 0.043 | H | -66.2 | -44.4 | NA | NA | NA | |||||||||||||
| 3bc8 | 1 | Q6P6M7 | 90.2 | 0.0 |
X-RAY |
2007-12-18 | SER | A:289 | A:307 | 13.0 | 0.113 | H | -57.4 | -46.3 | 13.0 | 0.113 | 0.0 |
HOH |
2.873 |
OG |
O |
||
| 3bca | 1 | Q6P6M7 | 90.2 | 0.0 |
X-RAY |
2007-12-18 | SER | A:289 | A:307 | 48.0 | 0.417 | H | -55.4 | -44.9 | 48.0 | 0.417 | 0.0 |
IOD IOD IOD IOD IOD IOD IOD IOD HOH |
7.582 8.585 9.331 7.661 8.539 4.481 8.089 7.332 3.315 |
O N CB OG OG CB O C OG |
I I I I I I I I O |
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| 3bcb | 1 | Q6P6M7 | 90.2 | 0.0 |
X-RAY |
2007-12-18 | SER | A:289 | A:307 | 7.0 | 0.061 | H | -55.7 | -46.7 | 7.0 | 0.061 | 0.0 |
HOH |
4.516 |
OG |
O |
||
AlphaFold DB
| Entity | Residue | Monomer | View | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ID | Entity | Uniprot | Identity | Evalue | Name | Label | Auth | ASA | rASA | SS | φ | ψ | |
| af-q9hd40-f1 | 1 | Q9HD40 | 100.0 | 0.0 | SER | A:307 | A:307 | 3.0 | 0.026 | H | -58.4 | -46.4 | |