Variant

Genome Chromosome Position VCF ID Ref Alt mRNA Change mRNA Info
GRCh37 chr4 25146658 . G A CCDS3432.2:NM_016955.3:c.902tCa>tTa_NP_058651.3:p.301S>L Homo sapiens Sep (O-phosphoserine) tRNA:Sec (selenocysteine) tRNA synthase (SEPSECS), mRNA.
pdb_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 
alphafold_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 

PDB

Entity Residue Monomer BioUnit Ligand View
PDB Entity Uniprot Identity Evalue ExpMethod Date Name Label Auth ASA rASA SS φ ψ ASA rASA ΔASA Interaction Name Distance Atom(p) Atom(l)
3hl2 1 Q9HD40 100.0 0.0 X-RAY
 2009-10-06 SER A:301 A:301 68.0 0.591 H -57.8 -39.6 68.0 0.591 0.0 HOH
 2.954
 N
 O
SER B:301 B:301 66.0 0.574 H -45.7 -64.6 66.0 0.574 0.0 HOH
 3.018
 OG
 O
SER C:301 C:301 72.0 0.626 H -55.4 -41.9 NA NA NA
SER D:301 D:301 55.0 0.478 H -61.8 -44.5 NA NA NA
4zdl 1 Q9HD40 99.8 0.0 X-RAY
 2016-04-20 SER A:301 A:301 65.0 0.565 H -63.6 -39.0 65.0 0.565 0.0 HOH
 2.706
 N
 O
SER B:301 B:301 63.0 0.548 H -68.6 -30.5 63.0 0.548 0.0 HOH
 3.079
 OG
 O
4zdo 1 Q9HD40 99.8 0.0 X-RAY
 2016-04-20 SER A:301 A:301 59.0 0.513 H -63.9 -28.8 59.0 0.513 0.0 HOH
 2.562
 OG
 O
SER B:301 B:301 63.0 0.548 H -75.3 -32.9 63.0 0.548 0.0 HOH
 3.007
 OG
 O
SER C:301 C:301 64.0 0.557 H -60.0 -32.2 NA NA NA
SER D:301 D:301 67.0 0.583 H -68.1 -44.5 NA NA NA
4zdp 1 Q9HD40 99.8 0.0 X-RAY
 2016-04-20 SER A:301 A:301 59.0 0.513 H -74.3 -28.0 59.0 0.513 0.0 HOH
 6.929
 N
 O
SER B:301 B:301 63.0 0.548 H -68.6 -40.6 63.0 0.548 0.0 HOH
 7.399
 N
 O
SER C:301 C:301 63.0 0.548 H -59.4 -39.4 NA NA NA
SER D:301 D:301 67.0 0.583 H -77.3 -35.5 NA NA NA
3bc8 1 Q6P6M7 90.2 0.0 X-RAY
 2007-12-18 PRO A:283 A:301 83.0 0.572 H -53.6 -40.9 83.0 0.572 0.0 HOH
 3.160
 O
 O
3bca 1 Q6P6M7 90.2 0.0 X-RAY
 2007-12-18 PRO A:283 A:301 81.0 0.559 H -51.8 -42.3 81.0 0.559 0.0 IOD
IOD
IOD
IOD
IOD
IOD
HOH
 7.558
9.701
3.828
7.471
5.043
7.030
3.141
 O
C
CA
CD
C
O
O
 I
I
I
I
I
I
O
3bcb 1 Q6P6M7 90.2 0.0 X-RAY
 2007-12-18 PRO A:283 A:301 71.0 0.49 H -53.2 -40.8 71.0 0.49 0.0 HOH
 2.991
 O
 O

AlphaFold DB

Entity Residue Monomer View
ID Entity Uniprot Identity Evalue Name Label Auth ASA rASA SS φ ψ
af-q9hd40-f1 1 Q9HD40 100.0 0.0 SER A:301 A:301 62.0 0.539 H -61.7 -41.7