Variant

Genome Chromosome Position VCF ID Ref Alt mRNA Change mRNA Info
GRCh37 chr4 25146749 . G A CCDS3432.2:NM_016955.3:c.811Cga>Tga_NP_058651.3:p.271R>* Homo sapiens Sep (O-phosphoserine) tRNA:Sec (selenocysteine) tRNA synthase (SEPSECS), mRNA.
pdb_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 
alphafold_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 

PDB

Entity Residue Monomer BioUnit Ligand View
PDB Entity Uniprot Identity Evalue ExpMethod Date Name Label Auth ASA rASA SS φ ψ ASA rASA ΔASA Interaction Name Distance Atom(p) Atom(l)
3hl2 1 Q9HD40 100.0 0.0 X-RAY
 2009-10-06 ARG A:271 A:271 175.0 0.778 H -80.3 -55.0 175.0 0.778 0.0 G
G
U
A
C
A
U
U
C
A
HOH
 8.417
8.387
9.731
5.420
2.697
3.590
8.282
3.673
2.524
7.042
5.044
 NH1
CD
CZ
NH2
NH1
NH1
NH1
NH1
NH1
NH1
N
 O6
O6
O2
O2'
O3'
OP1
O3'
O3'
OP1
N6
O
ARG B:271 B:271 185.0 0.822 H -77.6 -32.7 185.0 0.822 0.0 HOH
 3.134
 CD
 O
ARG C:271 C:271 180.0 0.8 H -64.3 -45.2 NA NA NA
ARG D:271 D:271 194.0 0.862 H -81.6 -43.7 NA NA NA
4zdl 1 Q9HD40 99.8 0.0 X-RAY
 2016-04-20 ARG A:271 A:271 73.0 NA H -62.4 -51.7 73.0 NA NA HOH
 3.616
 O
 O
ARG B:271 B:271 155.0 0.689 H -70.5 -48.7 155.0 0.689 0.0 HOH
 2.908
 NH2
 O
4zdo 1 Q9HD40 99.8 0.0 X-RAY
 2016-04-20 ARG A:271 A:271 114.0 NA H -77.6 -52.6 114.0 NA NA G
G
G
U
A
C
A
U
C
A
HOH
 9.365
7.743
9.673
9.821
7.760
3.714
4.581
4.774
3.385
7.197
3.998
 CD
CD
CD
CD
CD
CD
CD
CD
CD
CD
N
 O6
O6
N2
O2
O2'
O3'
OP1
O3'
OP1
N7
O
ARG B:271 B:271 199.0 0.884 H -87.6 -35.2 199.0 0.884 0.0 HOH
 2.909
 CD
 O
ARG C:271 C:271 176.0 0.782 H -77.7 -46.9 NA NA NA
ARG D:271 D:271 201.0 0.893 H -84.1 -31.8 NA NA NA
4zdp 1 Q9HD40 99.8 0.0 X-RAY
 2016-04-20 ARG A:271 A:271 122.0 NA H -69.5 -52.2 122.0 NA NA G
G
G
U
C
A
C
A
G
U
C
A
HOH
 9.546
8.014
9.993
9.698
9.805
6.866
3.423
3.989
9.851
4.895
3.487
7.129
4.902
 CD
CD
NE
NE
NE
NE
CD
CD
CD
CD
CD
CD
N
 O6
O6
N2
O2
O2
O2'
O3'
OP1
P
O3'
OP1
N7
O
ARG B:271 B:271 185.0 0.822 H -80.2 -33.9 185.0 0.822 0.0 HOH
 3.387
 O
 O
ARG C:271 C:271 168.0 0.747 H -73.1 -43.1 NA NA NA
ARG D:271 D:271 188.0 0.836 H -87.2 -35.9 NA NA NA
3bc8 1 Q6P6M7 90.2 0.0 X-RAY
 2007-12-18 ARG A:253 A:271 173.0 0.769 H -72.7 -38.1 173.0 0.769 0.0 HOH
 2.769
 NE
 O
3bca 1 Q6P6M7 90.2 0.0 X-RAY
 2007-12-18 ARG A:253 A:271 170.0 0.756 H -74.7 -39.7 170.0 0.756 0.0 IOD
IOD
IOD
IOD
HOH
 3.329
8.163
9.482
3.922
5.560
 NE
O
N
CD
N
 I
I
I
I
O
3bcb 1 Q6P6M7 90.2 0.0 X-RAY
 2007-12-18 ARG A:253 A:271 171.0 0.76 H -77.2 -34.8 171.0 0.76 0.0 HOH
 3.228
 CD
 O

AlphaFold DB

Entity Residue Monomer View
ID Entity Uniprot Identity Evalue Name Label Auth ASA rASA SS φ ψ
af-q9hd40-f1 1 Q9HD40 100.0 0.0 ARG A:271 A:271 175.0 0.778 H -78.4 -40.4