Variant
| Genome | Chromosome | Position | VCF ID | Ref | Alt | mRNA Change | mRNA Info | GRCh37 | chr4 | 25153620 | . | C | A | CCDS3432.2:NM_016955.3:c.766Gga>Tga_NP_058651.3:p.256G>* | Homo sapiens Sep (O-phosphoserine) tRNA:Sec (selenocysteine) tRNA synthase (SEPSECS), mRNA. |
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PDB
| Entity | Residue | Monomer | BioUnit | Ligand | View | ||||||||||||||||||
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| PDB | Entity | Uniprot | Identity | Evalue | ExpMethod | Date | Name | Label | Auth | ASA | rASA | SS | φ | ψ | ASA | rASA | ΔASA | Interaction | Name | Distance | Atom(p) | Atom(l) | |
| 3hl2 | 1 | Q9HD40 | 100.0 | 0.0 |
X-RAY |
2009-10-06 | GLY | A:256 | A:256 | 0.0 | 0.0 | -98.5 | -6.8 | 0.0 | 0.0 | 0.0 |
PLR C PLR HOH |
8.281 9.419 8.281 5.120 |
N O N O |
O3 OP1 O3 O |
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| GLY | B:256 | B:256 | 0.0 | 0.0 | -98.7 | -4.4 | 0.0 | 0.0 | 0.0 |
PLR PLR HOH |
8.075 8.075 5.347 |
N N O |
O3 O3 O |
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| GLY | C:256 | C:256 | 0.0 | 0.0 | G | -80.4 | -14.4 | NA | NA | NA | |||||||||||||
| GLY | D:256 | D:256 | 0.0 | 0.0 | -100.4 | -3.8 | NA | NA | NA | ||||||||||||||
| 4zdl | 1 | Q9HD40 | 99.8 | 0.0 |
X-RAY |
2016-04-20 | GLY | A:256 | A:256 | 0.0 | 0.0 | -95.3 | -9.2 | 0.0 | 0.0 | 0.0 |
PLR HOH |
8.270 5.187 |
N O |
O3 O |
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| GLY | B:256 | B:256 | 0.0 | 0.0 | T | -93.0 | -13.6 | 0.0 | 0.0 | 0.0 |
PLR HOH |
8.039 5.070 |
N O |
O3 O |
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| 4zdo | 1 | Q9HD40 | 99.8 | 0.0 |
X-RAY |
2016-04-20 | GLY | A:256 | A:256 | 0.0 | 0.0 | -113.9 | -1.1 | 0.0 | 0.0 | 0.0 |
C PLR HOH |
9.791 8.214 5.284 |
O N O |
OP1 O3 O |
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| GLY | B:256 | B:256 | 0.0 | 0.0 | -114.3 | 8.7 | 0.0 | 0.0 | 0.0 |
PLR HOH |
7.957 5.209 |
N O |
O3 O |
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| GLY | C:256 | C:256 | 0.0 | 0.0 | -107.1 | -5.7 | NA | NA | NA | ||||||||||||||
| GLY | D:256 | D:256 | 0.0 | 0.0 | -111.2 | 7.6 | NA | NA | NA | ||||||||||||||
| 4zdp | 1 | Q9HD40 | 99.8 | 0.0 |
X-RAY |
2016-04-20 | GLY | A:256 | A:256 | 0.0 | 0.0 | -108.9 | -3.4 | 0.0 | 0.0 | 0.0 |
C PLR HOH |
9.737 8.140 6.807 |
O N C |
OP1 O3 O |
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| GLY | B:256 | B:256 | 0.0 | 0.0 | -103.4 | 8.2 | 0.0 | 0.0 | 0.0 |
PLR HOH |
8.187 5.525 |
N O |
O3 O |
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| GLY | C:256 | C:256 | 0.0 | 0.0 | -107.6 | -1.3 | NA | NA | NA | ||||||||||||||
| GLY | D:256 | D:256 | 0.0 | 0.0 | -100.4 | -2.4 | NA | NA | NA | ||||||||||||||
| 3bc8 | 1 | Q6P6M7 | 90.2 | 0.0 |
X-RAY |
2007-12-18 | GLY | A:238 | A:256 | 0.0 | 0.0 | T | -90.1 | -16.6 | 0.0 | 0.0 | 0.0 |
CL HOH |
6.907 4.021 |
O N |
CL O |
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| 3bca | 1 | Q6P6M7 | 90.2 | 0.0 |
X-RAY |
2007-12-18 | GLY | A:238 | A:256 | 0.0 | 0.0 | T | -98.6 | -10.6 | 0.0 | 0.0 | 0.0 |
IOD IOD IOD HOH |
7.378 8.008 9.961 4.170 |
O O O N |
I I I O |
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| 3bcb | 1 | Q6P6M7 | 90.2 | 0.0 |
X-RAY |
2007-12-18 | GLY | A:238 | A:256 | 0.0 | 0.0 | T | -95.8 | -14.4 | 0.0 | 0.0 | 0.0 |
CL HOH |
6.940 4.086 |
O N |
CL O |
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AlphaFold DB
| Entity | Residue | Monomer | View | ||||||||||
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| ID | Entity | Uniprot | Identity | Evalue | Name | Label | Auth | ASA | rASA | SS | φ | ψ | |
| af-q9hd40-f1 | 1 | Q9HD40 | 100.0 | 0.0 | GLY | A:256 | A:256 | 0.0 | 0.0 | T | -97.2 | -9.3 | |