Variant
| Genome | Chromosome | Position | VCF ID | Ref | Alt | mRNA Change | mRNA Info | GRCh37 | chr4 | 25153671 | . | C | A | CCDS3432.2:NM_016955.3:c.715Gct>Tct_NP_058651.3:p.239A>S | Homo sapiens Sep (O-phosphoserine) tRNA:Sec (selenocysteine) tRNA synthase (SEPSECS), mRNA. |
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PDB
| Entity | Residue | Monomer | BioUnit | Ligand | View | ||||||||||||||||||
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| PDB | Entity | Uniprot | Identity | Evalue | ExpMethod | Date | Name | Label | Auth | ASA | rASA | SS | φ | ψ | ASA | rASA | ΔASA | Interaction | Name | Distance | Atom(p) | Atom(l) | |
| 3hl2 | 1 | Q9HD40 | 100.0 | 0.0 |
X-RAY |
2009-10-06 | ALA | A:239 | A:239 | 0.0 | 0.0 | H | -61.9 | -26.0 | 0.0 | 0.0 | 0.0 |
HOH |
6.853 |
CB |
O |
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| ALA | B:239 | B:239 | 0.0 | 0.0 | H | -60.6 | -32.4 | 0.0 | 0.0 | 0.0 |
HOH |
6.393 |
N |
O |
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| ALA | C:239 | C:239 | 0.0 | 0.0 | H | -56.5 | -31.2 | NA | NA | NA | |||||||||||||
| ALA | D:239 | D:239 | 0.0 | 0.0 | H | -60.2 | -24.1 | NA | NA | NA | |||||||||||||
| 4zdl | 1 | Q9HD40 | 99.8 | 0.0 |
X-RAY |
2016-04-20 | ALA | A:239 | A:239 | 0.0 | 0.0 | H | -57.0 | -35.5 | 0.0 | 0.0 | 0.0 |
HOH |
6.496 |
N |
O |
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| ALA | B:239 | B:239 | 0.0 | 0.0 | H | -60.0 | -41.9 | 0.0 | 0.0 | 0.0 |
HOH |
6.051 |
C |
O |
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| 4zdo | 1 | Q9HD40 | 99.8 | 0.0 |
X-RAY |
2016-04-20 | ALA | A:239 | A:239 | 0.0 | 0.0 | H | -74.6 | -20.4 | 0.0 | 0.0 | 0.0 |
HOH |
6.269 |
N |
O |
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| ALA | B:239 | B:239 | 0.0 | 0.0 | H | -73.6 | -21.6 | 0.0 | 0.0 | 0.0 |
HOH |
7.572 |
N |
O |
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| ALA | C:239 | C:239 | 0.0 | 0.0 | H | -72.3 | -28.2 | NA | NA | NA | |||||||||||||
| ALA | D:239 | D:239 | 0.0 | 0.0 | H | -73.5 | -26.1 | NA | NA | NA | |||||||||||||
| 4zdp | 1 | Q9HD40 | 99.8 | 0.0 |
X-RAY |
2016-04-20 | ALA | A:239 | A:239 | 0.0 | 0.0 | H | -73.0 | -26.0 | 0.0 | 0.0 | 0.0 |
HOH |
6.205 |
N |
O |
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| ALA | B:239 | B:239 | 0.0 | 0.0 | H | -68.5 | -26.8 | 0.0 | 0.0 | 0.0 |
HOH |
6.731 |
CB |
O |
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| ALA | C:239 | C:239 | 0.0 | 0.0 | H | -67.7 | -27.9 | NA | NA | NA | |||||||||||||
| ALA | D:239 | D:239 | 0.0 | 0.0 | H | -69.7 | -34.1 | NA | NA | NA | |||||||||||||
| 3bc8 | 1 | Q6P6M7 | 90.2 | 0.0 |
X-RAY |
2007-12-18 | ALA | A:221 | A:239 | 0.0 | 0.0 | H | -62.8 | -41.4 | 0.0 | 0.0 | 0.0 |
HOH |
4.871 |
O |
O |
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| 3bca | 1 | Q6P6M7 | 90.2 | 0.0 |
X-RAY |
2007-12-18 | ALA | A:221 | A:239 | 0.0 | 0.0 | H | -62.0 | -39.4 | 0.0 | 0.0 | 0.0 |
IOD HOH |
6.271 4.976 |
O O |
I O |
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| 3bcb | 1 | Q6P6M7 | 90.2 | 0.0 |
X-RAY |
2007-12-18 | ALA | A:221 | A:239 | 0.0 | 0.0 | H | -61.5 | -38.9 | 0.0 | 0.0 | 0.0 |
HOH |
4.729 |
O |
O |
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AlphaFold DB
| Entity | Residue | Monomer | View | ||||||||||
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| ID | Entity | Uniprot | Identity | Evalue | Name | Label | Auth | ASA | rASA | SS | φ | ψ | |
| af-q9hd40-f1 | 1 | Q9HD40 | 100.0 | 0.0 | ALA | A:239 | A:239 | 0.0 | 0.0 | H | -65.6 | -36.4 | |