Variant
| Genome | Chromosome | Position | VCF ID | Ref | Alt | mRNA Change | mRNA Info | GRCh37 | chr4 | 25156673 | . | G | A | CCDS3432.2:NM_016955.3:c.648tgC>tgT_NP_058651.3:p.216C>C | Homo sapiens Sep (O-phosphoserine) tRNA:Sec (selenocysteine) tRNA synthase (SEPSECS), mRNA. |
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PDB
| Entity | Residue | Monomer | BioUnit | Ligand | View | ||||||||||||||||||
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| PDB | Entity | Uniprot | Identity | Evalue | ExpMethod | Date | Name | Label | Auth | ASA | rASA | SS | φ | ψ | ASA | rASA | ΔASA | Interaction | Name | Distance | Atom(p) | Atom(l) | |
| 3hl2 | 1 | Q9HD40 | 100.0 | 0.0 |
X-RAY |
2009-10-06 | CYS | A:216 | A:216 | 46.0 | 0.341 | G | -89.3 | -7.3 | 46.0 | 0.341 | 0.0 | ||||||
| CYS | B:216 | B:216 | 45.0 | 0.333 | G | -88.2 | -8.4 | 45.0 | 0.333 | 0.0 |
HOH |
4.692 |
N |
O |
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| CYS | C:216 | C:216 | 49.0 | 0.363 | G | -96.3 | -3.7 | NA | NA | NA | |||||||||||||
| CYS | D:216 | D:216 | 45.0 | 0.333 | G | -88.7 | -8.5 | NA | NA | NA | |||||||||||||
| 4zdl | 1 | Q9HD40 | 99.8 | 0.0 |
X-RAY |
2016-04-20 | CYS | A:216 | A:216 | 47.0 | 0.348 | G | -99.5 | -3.2 | 47.0 | 0.348 | 0.0 |
HOH |
4.313 |
SG |
O |
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| CYS | B:216 | B:216 | 40.0 | 0.296 | G | -96.8 | -0.8 | 40.0 | 0.296 | 0.0 |
HOH |
4.740 |
N |
O |
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| 4zdo | 1 | Q9HD40 | 99.8 | 0.0 |
X-RAY |
2016-04-20 | CYS | A:216 | A:216 | 47.0 | 0.348 | G | -92.0 | 3.0 | 47.0 | 0.348 | 0.0 |
HOH |
6.439 |
N |
O |
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| CYS | B:216 | B:216 | 45.0 | 0.333 | G | -88.3 | -9.2 | 45.0 | 0.333 | 0.0 |
HOH |
4.584 |
N |
O |
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| CYS | C:216 | C:216 | 47.0 | 0.348 | G | -96.9 | 3.8 | NA | NA | NA | |||||||||||||
| CYS | D:216 | D:216 | 44.0 | 0.326 | G | -89.9 | 6.4 | NA | NA | NA | |||||||||||||
| 4zdp | 1 | Q9HD40 | 99.8 | 0.0 |
X-RAY |
2016-04-20 | CYS | A:216 | A:216 | 48.0 | 0.356 | G | -96.0 | -0.6 | 48.0 | 0.356 | 0.0 |
HOH |
3.697 |
SG |
O |
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| CYS | B:216 | B:216 | 43.0 | 0.319 | G | -88.4 | -2.9 | 43.0 | 0.319 | 0.0 |
HOH |
2.693 |
SG |
O |
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| CYS | C:216 | C:216 | 45.0 | 0.333 | G | -90.5 | -1.0 | NA | NA | NA | |||||||||||||
| CYS | D:216 | D:216 | 46.0 | 0.341 | G | -86.4 | -0.1 | NA | NA | NA | |||||||||||||
| 3bc8 | 1 | Q6P6M7 | 90.2 | 0.0 |
X-RAY |
2007-12-18 | HIS | A:198 | A:216 | 77.0 | 0.395 | G | -96.1 | -2.2 | 77.0 | 0.395 | 0.0 |
HOH |
3.015 |
NE2 |
O |
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| 3bca | 1 | Q6P6M7 | 90.2 | 0.0 |
X-RAY |
2007-12-18 | HIS | A:198 | A:216 | 83.0 | 0.426 | G | -86.8 | -4.4 | 83.0 | 0.426 | 0.0 |
IOD IOD IOD IOD HOH |
9.681 4.306 3.536 9.958 4.304 |
N ND1 CD2 O NE2 |
I I I I O |
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| 3bcb | 1 | Q6P6M7 | 90.2 | 0.0 |
X-RAY |
2007-12-18 | HIS | A:198 | A:216 | 66.0 | 0.338 | G | -94.2 | 1.4 | 66.0 | 0.338 | 0.0 |
HOH |
3.366 |
NE2 |
O |
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AlphaFold DB
| Entity | Residue | Monomer | View | ||||||||||
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| ID | Entity | Uniprot | Identity | Evalue | Name | Label | Auth | ASA | rASA | SS | φ | ψ | |
| af-q9hd40-f1 | 1 | Q9HD40 | 100.0 | 0.0 | CYS | A:216 | A:216 | 45.0 | 0.333 | G | -83.6 | -9.6 | |