Variant

Genome Chromosome Position VCF ID Ref Alt mRNA Change mRNA Info
GRCh37 chr4 25156687 . G A CCDS3432.2:NM_016955.3:c.634Ctt>Ttt_NP_058651.3:p.212L>F Homo sapiens Sep (O-phosphoserine) tRNA:Sec (selenocysteine) tRNA synthase (SEPSECS), mRNA.
pdb_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 
alphafold_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 

PDB

Entity Residue Monomer BioUnit Ligand View
PDB Entity Uniprot Identity Evalue ExpMethod Date Name Label Auth ASA rASA SS φ ψ ASA rASA ΔASA Interaction Name Distance Atom(p) Atom(l)
3hl2 1 Q9HD40 100.0 0.0 X-RAY
 2009-10-06 LEU A:212 A:212 40.0 0.235 H -82.5 -32.0 40.0 0.235 0.0
LEU B:212 B:212 36.0 0.212 H -97.5 -27.3 36.0 0.212 0.0 HOH
 5.144
 O
 O
LEU C:212 C:212 40.0 0.235 H -93.2 -25.5 NA NA NA
LEU D:212 D:212 33.0 0.194 H -94.8 -22.5 NA NA NA
4zdl 1 Q9HD40 99.8 0.0 X-RAY
 2016-04-20 LEU A:212 A:212 39.0 0.229 H -86.3 -22.4 39.0 0.229 0.0 HOH
 4.092
 CD2
 O
LEU B:212 B:212 41.0 0.241 H -113.9 -29.7 41.0 0.241 0.0 HOH
 4.213
 CD2
 O
4zdo 1 Q9HD40 99.8 0.0 X-RAY
 2016-04-20 LEU A:212 A:212 41.0 0.241 H -90.2 -36.9 41.0 0.241 0.0
LEU B:212 B:212 36.0 0.212 H -85.4 -34.9 36.0 0.212 0.0 HOH
 5.428
 O
 O
LEU C:212 C:212 42.0 0.247 H -98.1 -34.1 NA NA NA
LEU D:212 D:212 38.0 0.224 H -83.2 -39.3 NA NA NA
4zdp 1 Q9HD40 99.8 0.0 X-RAY
 2016-04-20 LEU A:212 A:212 44.0 0.259 H -87.8 -45.3 44.0 0.259 0.0 HOH
 2.403
 O
 O
LEU B:212 B:212 39.0 0.229 H -84.3 -36.7 39.0 0.229 0.0 HOH
 5.523
 O
 O
LEU C:212 C:212 43.0 0.253 H -97.7 -32.9 NA NA NA
LEU D:212 D:212 38.0 0.224 H -81.6 -34.7 NA NA NA
3bc8 1 Q6P6M7 90.2 0.0 X-RAY
 2007-12-18 LEU A:194 A:212 31.0 0.182 H -89.6 -24.7 31.0 0.182 0.0 HOH
 2.670
 O
 O
3bca 1 Q6P6M7 90.2 0.0 X-RAY
 2007-12-18 LEU A:194 A:212 33.0 0.194 H -87.4 -26.3 33.0 0.194 0.0 IOD
IOD
IOD
IOD
HOH
 7.681
5.205
5.460
4.241
5.952
 C
O
O
CD2
N
 I
I
I
I
O
3bcb 1 Q6P6M7 90.2 0.0 X-RAY
 2007-12-18 LEU A:194 A:212 32.0 0.188 H -88.7 -22.3 32.0 0.188 0.0 HOH
 2.887
 O
 O

AlphaFold DB

Entity Residue Monomer View
ID Entity Uniprot Identity Evalue Name Label Auth ASA rASA SS φ ψ
af-q9hd40-f1 1 Q9HD40 100.0 0.0 LEU A:212 A:212 38.0 0.224 H -87.0 -21.3