Variant

Genome Chromosome Position VCF ID Ref Alt mRNA Change mRNA Info
GRCh37 chr4 25157701 . G A CCDS3432.2:NM_016955.3:c.505Cga>Tga_NP_058651.3:p.169R>* Homo sapiens Sep (O-phosphoserine) tRNA:Sec (selenocysteine) tRNA synthase (SEPSECS), mRNA.
pdb_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 
alphafold_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 

PDB

Entity Residue Monomer BioUnit Ligand View
PDB Entity Uniprot Identity Evalue ExpMethod Date Name Label Auth ASA rASA SS φ ψ ASA rASA ΔASA Interaction Name Distance Atom(p) Atom(l)
3hl2 1 Q9HD40 100.0 0.0 X-RAY
 2009-10-06 ARG A:169 A:169 2.0 0.009 -47.1 136.7 2.0 0.009 0.0 PLR
PLR
HOH
 9.223
9.223
3.892
 O
O
CD
 C2A
C2A
O
ARG B:169 B:169 1.0 0.004 -46.9 133.5 1.0 0.004 0.0 PLR
PLR
HOH
 9.283
9.283
3.387
 C
C
NH1
 C2A
C2A
O
ARG C:169 C:169 1.0 0.004 -50.9 137.2 NA NA NA
ARG D:169 D:169 1.0 0.004 -49.2 131.9 NA NA NA
4zdl 1 Q9HD40 99.8 0.0 X-RAY
 2016-04-20 ARG A:169 A:169 1.0 0.004 -55.8 127.5 1.0 0.004 0.0 PLR
HOH
 9.064
3.506
 C
NH1
 C2A
O
ARG B:169 B:169 2.0 0.009 -57.3 138.8 2.0 0.009 0.0 PLR
HOH
 9.087
3.268
 C
NH1
 C2A
O
4zdo 1 Q9HD40 99.8 0.0 X-RAY
 2016-04-20 ARG A:169 A:169 1.0 0.004 -56.2 137.3 1.0 0.004 0.0 PLR
HOH
 9.129
3.174
 C
NH1
 C2A
O
ARG B:169 B:169 2.0 0.009 -51.6 135.7 2.0 0.009 0.0 PLR
HOH
 9.058
3.832
 C
CD
 C2A
O
ARG C:169 C:169 1.0 0.004 -56.7 134.0 NA NA NA
ARG D:169 D:169 1.0 0.004 -54.8 134.4 NA NA NA
4zdp 1 Q9HD40 99.8 0.0 X-RAY
 2016-04-20 ARG A:169 A:169 1.0 0.004 -44.1 138.0 1.0 0.004 0.0 PLR
HOH
 9.045
3.253
 O
NH1
 C2A
O
ARG B:169 B:169 3.0 0.013 -56.5 137.6 3.0 0.013 0.0 PLR
HOH
 8.746
3.154
 C
NH1
 C2A
O
ARG C:169 C:169 2.0 0.009 -53.0 134.0 NA NA NA
ARG D:169 D:169 2.0 0.009 -56.0 138.7 NA NA NA
3bc8 1 Q6P6M7 90.2 0.0 X-RAY
 2007-12-18 ARG A:151 A:169 0.0 0.0 -55.2 131.3 0.0 0.0 0.0 HOH
 3.422
 NH1
 O
3bca 1 Q6P6M7 90.2 0.0 X-RAY
 2007-12-18 ARG A:151 A:169 1.0 0.004 -55.2 126.9 1.0 0.004 0.0 IOD
IOD
HOH
 8.153
9.993
3.553
 NH1
NH2
NH1
 I
I
O
3bcb 1 Q6P6M7 90.2 0.0 X-RAY
 2007-12-18 ARG A:151 A:169 1.0 0.004 -57.9 131.4 1.0 0.004 0.0 HOH
 3.339
 NH1
 O

AlphaFold DB

Entity Residue Monomer View
ID Entity Uniprot Identity Evalue Name Label Auth ASA rASA SS φ ψ
af-q9hd40-f1 1 Q9HD40 100.0 0.0 ARG A:169 A:169 1.0 0.004 -52.7 128.1