Variant
| Genome | Chromosome | Position | VCF ID | Ref | Alt | mRNA Change | mRNA Info | GRCh37 | chr4 | 25157705 | . | C | A | CCDS3432.2:NM_016955.3:c.501tgG>tgT_NP_058651.3:p.167W>C | Homo sapiens Sep (O-phosphoserine) tRNA:Sec (selenocysteine) tRNA synthase (SEPSECS), mRNA. |
|---|---|---|---|---|---|---|---|
|
|
|
|
|
PDB
| Entity | Residue | Monomer | BioUnit | Ligand | View | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| PDB | Entity | Uniprot | Identity | Evalue | ExpMethod | Date | Name | Label | Auth | ASA | rASA | SS | φ | ψ | ASA | rASA | ΔASA | Interaction | Name | Distance | Atom(p) | Atom(l) | |
| 3hl2 | 1 | Q9HD40 | 100.0 | 0.0 |
X-RAY |
2009-10-06 | TRP | A:167 | A:167 | 0.0 | 0.0 | E | -146.2 | 99.7 | 0.0 | 0.0 | 0.0 |
PLR PLR HOH |
7.921 7.921 3.006 |
NE1 NE1 NE1 |
N1 N1 O |
||
| TRP | B:167 | B:167 | 1.0 | 0.004 | E | -141.4 | 106.9 | 1.0 | 0.004 | 0.0 |
PLR PLR HOH |
7.726 7.726 3.212 |
NE1 NE1 NE1 |
N1 N1 O |
|||||||||
| TRP | C:167 | C:167 | 0.0 | 0.0 | E | -148.3 | 100.7 | NA | NA | NA | |||||||||||||
| TRP | D:167 | D:167 | 0.0 | 0.0 | E | -143.5 | 104.1 | NA | NA | NA | |||||||||||||
| 4zdl | 1 | Q9HD40 | 99.8 | 0.0 |
X-RAY |
2016-04-20 | TRP | A:167 | A:167 | 1.0 | 0.004 | E | -142.6 | 102.2 | 1.0 | 0.004 | 0.0 |
PLR HOH |
7.914 3.159 |
NE1 NE1 |
N1 O |
||
| TRP | B:167 | B:167 | 0.0 | 0.0 | E | -148.0 | 100.2 | 0.0 | 0.0 | 0.0 |
PLR HOH |
7.659 2.794 |
CZ2 NE1 |
N1 O |
|||||||||
| 4zdo | 1 | Q9HD40 | 99.8 | 0.0 |
X-RAY |
2016-04-20 | TRP | A:167 | A:167 | 0.0 | 0.0 | E | -139.9 | 104.4 | 0.0 | 0.0 | 0.0 |
PLR HOH |
8.021 3.058 |
CZ2 NE1 |
N1 O |
||
| TRP | B:167 | B:167 | 0.0 | 0.0 | E | -133.6 | 105.4 | 0.0 | 0.0 | 0.0 |
PLR HOH |
7.653 3.089 |
CZ2 NE1 |
N1 O |
|||||||||
| TRP | C:167 | C:167 | 0.0 | 0.0 | E | -141.5 | 103.6 | NA | NA | NA | |||||||||||||
| TRP | D:167 | D:167 | 1.0 | 0.004 | E | -133.9 | 104.4 | NA | NA | NA | |||||||||||||
| 4zdp | 1 | Q9HD40 | 99.8 | 0.0 |
X-RAY |
2016-04-20 | TRP | A:167 | A:167 | 0.0 | 0.0 | E | -140.1 | 101.9 | 0.0 | 0.0 | 0.0 |
PLR HOH |
7.952 3.293 |
NE1 NE1 |
N1 O |
||
| TRP | B:167 | B:167 | 0.0 | 0.0 | E | -138.4 | 102.7 | 0.0 | 0.0 | 0.0 |
PLR HOH |
7.580 3.155 |
CZ2 NE1 |
C2A O |
|||||||||
| TRP | C:167 | C:167 | 0.0 | 0.0 | E | -139.8 | 103.8 | NA | NA | NA | |||||||||||||
| TRP | D:167 | D:167 | 0.0 | 0.0 | E | -141.4 | 102.7 | NA | NA | NA | |||||||||||||
| 3bc8 | 1 | Q6P6M7 | 90.2 | 0.0 |
X-RAY |
2007-12-18 | TRP | A:149 | A:167 | 0.0 | 0.0 | E | -145.2 | 104.5 | 0.0 | 0.0 | 0.0 |
HOH |
3.002 |
NE1 |
O |
||
| 3bca | 1 | Q6P6M7 | 90.2 | 0.0 |
X-RAY |
2007-12-18 | TRP | A:149 | A:167 | 0.0 | 0.0 | E | -139.4 | 105.3 | 0.0 | 0.0 | 0.0 |
IOD IOD HOH |
9.823 9.823 3.226 |
CZ2 N NE1 |
I I O |
||
| 3bcb | 1 | Q6P6M7 | 90.2 | 0.0 |
X-RAY |
2007-12-18 | TRP | A:149 | A:167 | 0.0 | 0.0 | E | -141.9 | 103.9 | 0.0 | 0.0 | 0.0 |
HOH |
3.113 |
NE1 |
O |
||
AlphaFold DB
| Entity | Residue | Monomer | View | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ID | Entity | Uniprot | Identity | Evalue | Name | Label | Auth | ASA | rASA | SS | φ | ψ | |
| af-q9hd40-f1 | 1 | Q9HD40 | 100.0 | 0.0 | TRP | A:167 | A:167 | 2.0 | 0.008 | E | -140.9 | 106.4 | |