Variant

Genome Chromosome Position VCF ID Ref Alt mRNA Change mRNA Info
GRCh37 chr4 25157734 . T A CCDS3432.2:NM_016955.3:c.472Aaa>Taa_NP_058651.3:p.158K>* Homo sapiens Sep (O-phosphoserine) tRNA:Sec (selenocysteine) tRNA synthase (SEPSECS), mRNA.
pdb_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 
alphafold_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
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PDB

Entity Residue Monomer BioUnit Ligand View
PDB Entity Uniprot Identity Evalue ExpMethod Date Name Label Auth ASA rASA SS φ ψ ASA rASA ΔASA Interaction Name Distance Atom(p) Atom(l)
3hl2 1 Q9HD40 100.0 0.0 X-RAY
 2009-10-06 LYS A:158 A:158 111.0 0.555 H -78.7 -22.8 111.0 0.555 0.0 HOH
 3.161
 NZ
 O
LYS B:158 B:158 110.0 0.55 T -89.5 -14.7 110.0 0.55 0.0 HOH
 3.890
 CE
 O
LYS C:158 C:158 107.0 0.535 H -76.8 -24.9 NA NA NA
LYS D:158 D:158 113.0 0.565 H -83.9 -23.9 NA NA NA
4zdl 1 Q9HD40 99.8 0.0 X-RAY
 2016-04-20 LYS A:158 A:158 99.0 0.495 H -87.8 -21.4 99.0 0.495 0.0 HOH
 3.173
 NZ
 O
LYS B:158 B:158 91.0 NA H -93.4 -18.5 91.0 NA NA HOH
 3.519
 CG
 O
4zdo 1 Q9HD40 99.8 0.0 X-RAY
 2016-04-20 LYS A:158 A:158 105.0 0.525 H -81.4 -28.1 105.0 0.525 0.0 HOH
 4.136
 O
 O
LYS B:158 B:158 112.0 0.56 T -87.3 -27.4 112.0 0.56 0.0 HOH
 3.902
 CE
 O
LYS C:158 C:158 110.0 0.55 H -89.4 -21.7 NA NA NA
LYS D:158 D:158 105.0 0.525 T -90.0 -25.9 NA NA NA
4zdp 1 Q9HD40 99.8 0.0 X-RAY
 2016-04-20 LYS A:158 A:158 105.0 0.525 H -84.1 -26.3 105.0 0.525 0.0 HOH
 4.329
 CE
 O
LYS B:158 B:158 114.0 0.57 H -86.2 -20.9 114.0 0.57 0.0 HOH
 4.087
 O
 O
LYS C:158 C:158 95.0 NA H -91.4 -25.5 NA NA NA
LYS D:158 D:158 109.0 0.545 H -88.0 -12.6 NA NA NA
3bc8 1 Q6P6M7 90.2 0.0 X-RAY
 2007-12-18 LYS A:140 A:158 107.0 0.535 H -77.9 -31.6 107.0 0.535 0.0 HOH
 2.828
 O
 O
3bca 1 Q6P6M7 90.2 0.0 X-RAY
 2007-12-18 LYS A:140 A:158 103.0 0.515 H -76.4 -35.4 103.0 0.515 0.0 IOD
IOD
IOD
IOD
HOH
 3.526
3.857
3.823
8.606
3.793
 NZ
CB
NZ
NZ
NZ
 I
I
I
I
O
3bcb 1 Q6P6M7 90.2 0.0 X-RAY
 2007-12-18 LYS A:140 A:158 102.0 0.51 H -78.0 -32.8 102.0 0.51 0.0 HOH
 3.026
 NZ
 O

AlphaFold DB

Entity Residue Monomer View
ID Entity Uniprot Identity Evalue Name Label Auth ASA rASA SS φ ψ
af-q9hd40-f1 1 Q9HD40 100.0 0.0 LYS A:158 A:158 108.0 0.54 H -81.9 -28.9