Variant

Genome Chromosome Position VCF ID Ref Alt mRNA Change mRNA Info
GRCh37 chr4 25157739 . C A CCDS3432.2:NM_016955.3:c.467cGa>cTa_NP_058651.3:p.156R>L Homo sapiens Sep (O-phosphoserine) tRNA:Sec (selenocysteine) tRNA synthase (SEPSECS), mRNA.
pdb_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 
alphafold_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 

PDB

Entity Residue Monomer BioUnit Ligand View
PDB Entity Uniprot Identity Evalue ExpMethod Date Name Label Auth ASA rASA SS φ ψ ASA rASA ΔASA Interaction Name Distance Atom(p) Atom(l)
3hl2 1 Q9HD40 100.0 0.0 X-RAY
 2009-10-06 ARG A:156 A:156 85.0 0.378 H -47.3 -45.0 85.0 0.378 0.0 HOH
 2.854
 NH1
 O
ARG B:156 B:156 87.0 0.387 H -46.3 -47.9 87.0 0.387 0.0 HOH
 2.696
 NE
 O
ARG C:156 C:156 84.0 0.373 H -45.6 -50.8 NA NA NA
ARG D:156 D:156 85.0 0.378 H -45.7 -49.8 NA NA NA
4zdl 1 Q9HD40 99.8 0.0 X-RAY
 2016-04-20 ARG A:156 A:156 83.0 0.369 H -56.3 -52.4 33.0 0.147 0.222 A:Q9HD40:0.222
 HOH
 2.840
 NE
 O
ARG B:156 B:156 86.0 0.382 H -52.5 -47.6 36.0 0.16 0.222 B:Q9HD40:0.222
 HOH
 2.950
 NH2
 O
4zdo 1 Q9HD40 99.8 0.0 X-RAY
 2016-04-20 ARG A:156 A:156 87.0 0.387 H -56.2 -44.9 36.0 0.16 0.227 A:Q9HD40:0.227
 HOH
 2.704
 NH1
 O
ARG B:156 B:156 87.0 0.387 H -62.2 -39.4 34.0 0.151 0.236 B:Q9HD40:0.236
 HOH
 3.204
 NH1
 O
ARG C:156 C:156 87.0 0.387 H -52.8 -43.7 NA NA NA
ARG D:156 D:156 86.0 0.382 T -59.9 -36.0 NA NA NA
4zdp 1 Q9HD40 99.8 0.0 X-RAY
 2016-04-20 ARG A:156 A:156 91.0 0.404 H -52.2 -47.8 39.0 0.173 0.231 A:Q9HD40:0.231
 HOH
 2.761
 NH1
 O
ARG B:156 B:156 82.0 0.364 H -60.5 -38.9 32.0 0.142 0.222 B:Q9HD40:0.222
 HOH
 3.018
 NH1
 O
ARG C:156 C:156 89.0 0.396 H -57.7 -50.0 NA NA NA
ARG D:156 D:156 85.0 0.378 H -60.9 -41.5 NA NA NA
3bc8 1 Q6P6M7 90.2 0.0 X-RAY
 2007-12-18 ARG A:138 A:156 83.0 0.369 H -50.5 -46.0 35.0 0.156 0.213 A:Q6P6M7:0.213
 HOH
 2.847
 NE
 O
3bca 1 Q6P6M7 90.2 0.0 X-RAY
 2007-12-18 ARG A:138 A:156 84.0 0.373 H -58.2 -45.9 35.0 0.156 0.217 A:Q6P6M7:0.218
 IOD
IOD
IOD
HOH
 7.262
8.128
9.253
3.030
 C
N
CD
NH2
 I
I
I
O
3bcb 1 Q6P6M7 90.2 0.0 X-RAY
 2007-12-18 ARG A:138 A:156 86.0 0.382 H -49.8 -47.9 35.0 0.156 0.226 A:Q6P6M7:0.227
 HOH
 2.755
 NH2
 O

AlphaFold DB

Entity Residue Monomer View
ID Entity Uniprot Identity Evalue Name Label Auth ASA rASA SS φ ψ
af-q9hd40-f1 1 Q9HD40 100.0 0.0 ARG A:156 A:156 88.0 0.391 H -52.2 -44.6