Variant

Genome Chromosome Position VCF ID Ref Alt mRNA Change mRNA Info
GRCh37 chr4 25157782 . T A CCDS3432.2:NM_016955.3:c.424Atg>Ttg_NP_058651.3:p.142M>L Homo sapiens Sep (O-phosphoserine) tRNA:Sec (selenocysteine) tRNA synthase (SEPSECS), mRNA.
pdb_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 
alphafold_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 

PDB

Entity Residue Monomer BioUnit Ligand View
PDB Entity Uniprot Identity Evalue ExpMethod Date Name Label Auth ASA rASA SS φ ψ ASA rASA ΔASA Interaction Name Distance Atom(p) Atom(l)
3hl2 1 Q9HD40 100.0 0.0 X-RAY
 2009-10-06 MET A:142 A:142 26.0 0.141 S -124.2 166.4 26.0 0.141 0.0 PLR
PLR
HOH
 6.303
6.303
3.641
 O
O
CG
 O2P
O2P
O
MET B:142 B:142 28.0 0.151 S -129.7 165.1 28.0 0.151 0.0 PLR
PLR
HOH
 6.261
6.261
4.052
 O
O
CA
 O2P
O2P
O
MET C:142 C:142 28.0 0.151 S -118.8 167.4 NA NA NA
MET D:142 D:142 28.0 0.151 S -121.9 165.1 NA NA NA
4zdl 1 Q9HD40 99.8 0.0 X-RAY
 2016-04-20 MET A:142 A:142 29.0 0.157 S -125.6 156.8 0.0 0.0 0.157 A:Q9HD40:0.157
 PLR
HOH
 6.430
3.322
 C
CG
 O2P
O
MET B:142 B:142 28.0 0.151 S -131.7 162.1 0.0 0.0 0.151 B:Q9HD40:0.151
 PLR
HOH
 6.198
3.211
 O
CG
 O1P
O
4zdo 1 Q9HD40 99.8 0.0 X-RAY
 2016-04-20 MET A:142 A:142 37.0 0.2 S -125.4 160.5 1.0 0.005 0.195 A:Q9HD40:0.195
 PLR
PLR
HOH
 6.567
9.827
3.226
 C
CE
CE
 O2P
O2P
O
MET B:142 B:142 28.0 0.151 S -127.8 160.9 1.0 0.005 0.146 B:Q9HD40:0.146
 PLR
HOH
 6.548
3.598
 C
C
 O1P
O
MET C:142 C:142 26.0 0.141 S -130.6 157.0 NA NA NA
MET D:142 D:142 26.0 0.141 S -128.6 163.1 NA NA NA
4zdp 1 Q9HD40 99.8 0.0 X-RAY
 2016-04-20 MET A:142 A:142 30.0 0.162 S -123.0 162.4 1.0 0.005 0.157 A:Q9HD40:0.157
 PLR
HOH
 6.697
3.279
 C
CA
 O3P
O
MET B:142 B:142 31.0 0.168 S -123.9 165.6 2.0 0.011 0.157 B:Q9HD40:0.157
 PLR
HOH
 6.511
3.526
 C
C
 O1P
O
MET C:142 C:142 29.0 0.157 S -135.6 156.3 NA NA NA
MET D:142 D:142 29.0 0.157 S -134.0 163.5 NA NA NA
3bc8 1 Q6P6M7 90.2 0.0 X-RAY
 2007-12-18 MET A:124 A:142 31.0 0.168 S -130.1 155.8 2.0 0.011 0.157 A:Q6P6M7:0.157
 HOH
 3.433
 CG
 O
3bca 1 Q6P6M7 90.2 0.0 X-RAY
 2007-12-18 MET A:124 A:142 31.0 0.168 S -129.8 155.2 1.0 0.005 0.163 A:Q6P6M7:0.162
 HOH
 3.640
 CG
 O
3bcb 1 Q6P6M7 90.2 0.0 X-RAY
 2007-12-18 MET A:124 A:142 31.0 0.168 S -134.0 157.2 1.0 0.005 0.163 A:Q6P6M7:0.162
 HOH
 3.395
 CG
 O

AlphaFold DB

Entity Residue Monomer View
ID Entity Uniprot Identity Evalue Name Label Auth ASA rASA SS φ ψ
af-q9hd40-f1 1 Q9HD40 100.0 0.0 MET A:142 A:142 31.0 0.168 S -136.1 150.0