Variant

Genome Chromosome Position VCF ID Ref Alt mRNA Change mRNA Info
GRCh37 chr4 25157797 . A C CCDS3432.2:NM_016955.3:c.409Tgc>Ggc_NP_058651.3:p.137C>G Homo sapiens Sep (O-phosphoserine) tRNA:Sec (selenocysteine) tRNA synthase (SEPSECS), mRNA.
pdb_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 
alphafold_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 

PDB

Entity Residue Monomer BioUnit Ligand View
PDB Entity Uniprot Identity Evalue ExpMethod Date Name Label Auth ASA rASA SS φ ψ ASA rASA ΔASA Interaction Name Distance Atom(p) Atom(l)
3hl2 1 Q9HD40 100.0 0.0 X-RAY
 2009-10-06 CYS A:137 A:137 5.0 0.037 E -164.9 163.8 5.0 0.037 0.0 HOH
 3.659
 O
 O
CYS B:137 B:137 3.0 0.022 E -167.9 160.5 3.0 0.022 0.0 HOH
 5.978
 O
 O
CYS C:137 C:137 3.0 0.022 E -158.2 172.4 NA NA NA
CYS D:137 D:137 3.0 0.022 E -169.6 155.0 NA NA NA
4zdl 1 Q9HD40 99.8 0.0 X-RAY
 2016-04-20 CYS A:137 A:137 6.0 0.044 E -159.0 168.5 6.0 0.044 0.0 HOH
 3.316
 O
 O
CYS B:137 B:137 6.0 0.044 E -151.7 163.4 6.0 0.044 0.0 HOH
 6.211
 O
 O
4zdo 1 Q9HD40 99.8 0.0 X-RAY
 2016-04-20 CYS A:137 A:137 3.0 0.022 E -158.9 167.4 3.0 0.022 0.0 HOH
 3.366
 O
 O
CYS B:137 B:137 4.0 0.03 E -161.3 163.2 4.0 0.03 0.0 HOH
 6.460
 O
 O
CYS C:137 C:137 4.0 0.03 E -154.2 168.4 NA NA NA
CYS D:137 D:137 4.0 0.03 E -161.7 159.8 NA NA NA
4zdp 1 Q9HD40 99.8 0.0 X-RAY
 2016-04-20 CYS A:137 A:137 4.0 0.03 E -159.4 165.7 4.0 0.03 0.0 HOH
 3.119
 O
 O
CYS B:137 B:137 6.0 0.044 E -167.7 159.7 6.0 0.044 0.0 HOH
 3.204
 O
 O
CYS C:137 C:137 6.0 0.044 E -155.8 167.3 NA NA NA
CYS D:137 D:137 5.0 0.037 E -169.9 160.9 NA NA NA
3bc8 1 Q6P6M7 90.2 0.0 X-RAY
 2007-12-18 CYS A:119 A:137 11.0 0.081 E -158.1 161.5 11.0 0.081 0.0 HOH
 2.786
 O
 O
3bca 1 Q6P6M7 90.2 0.0 X-RAY
 2007-12-18 CYS A:119 A:137 13.0 0.096 E -161.7 161.2 13.0 0.096 0.0 IOD
IOD
IOD
IOD
HOH
 9.027
5.373
3.613
4.851
5.337
 SG
O
O
O
N
 I
I
I
I
O
3bcb 1 Q6P6M7 90.2 0.0 X-RAY
 2007-12-18 CYS A:119 A:137 14.0 0.104 E -158.5 159.9 14.0 0.104 0.0 HOH
 2.672
 O
 O

AlphaFold DB

Entity Residue Monomer View
ID Entity Uniprot Identity Evalue Name Label Auth ASA rASA SS φ ψ
af-q9hd40-f1 1 Q9HD40 100.0 0.0 CYS A:137 A:137 2.0 0.015 E -154.3 158.2