Variant

Genome Chromosome Position VCF ID Ref Alt mRNA Change mRNA Info
GRCh37 chr4 25158511 . T A CCDS3432.2:NM_016955.3:c.355Aat>Tat_NP_058651.3:p.119N>Y Homo sapiens Sep (O-phosphoserine) tRNA:Sec (selenocysteine) tRNA synthase (SEPSECS), mRNA.
pdb_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 
alphafold_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 

PDB

Entity Residue Monomer BioUnit Ligand View
PDB Entity Uniprot Identity Evalue ExpMethod Date Name Label Auth ASA rASA SS φ ψ ASA rASA ΔASA Interaction Name Distance Atom(p) Atom(l)
3hl2 1 Q9HD40 100.0 0.0 X-RAY
 2009-10-06 ASN A:119 A:119 23.0 0.144 H -61.2 -40.4 23.0 0.144 0.0 HOH
 2.816
 ND2
 O
ASN B:119 B:119 26.0 0.163 H -59.5 -36.4 26.0 0.163 0.0 HOH
 3.182
 OD1
 O
ASN C:119 C:119 25.0 0.156 H -55.8 -42.9 NA NA NA
ASN D:119 D:119 29.0 0.181 H -59.1 -39.6 NA NA NA
4zdl 1 Q9HD40 99.8 0.0 X-RAY
 2016-04-20 ASN A:119 A:119 27.0 0.169 H -56.5 -37.6 27.0 0.169 0.0 HOH
 2.707
 OD1
 O
ASN B:119 B:119 26.0 0.163 H -57.9 -44.5 26.0 0.163 0.0 HOH
 2.971
 OD1
 O
4zdo 1 Q9HD40 99.8 0.0 X-RAY
 2016-04-20 ASN A:119 A:119 29.0 0.181 H -66.9 -37.1 29.0 0.181 0.0 HOH
 3.423
 OD1
 O
ASN B:119 B:119 29.0 0.181 H -60.4 -38.9 29.0 0.181 0.0 HOH
 3.152
 ND2
 O
ASN C:119 C:119 30.0 0.188 H -64.9 -39.2 NA NA NA
ASN D:119 D:119 30.0 0.188 H -65.5 -35.7 NA NA NA
4zdp 1 Q9HD40 99.8 0.0 X-RAY
 2016-04-20 ASN A:119 A:119 27.0 0.169 H -58.7 -37.7 27.0 0.169 0.0 HOH
 2.989
 OD1
 O
ASN B:119 B:119 27.0 0.169 H -67.1 -38.3 27.0 0.169 0.0 HOH
 2.828
 ND2
 O
ASN C:119 C:119 29.0 0.181 H -66.2 -34.2 NA NA NA
ASN D:119 D:119 29.0 0.181 H -69.4 -37.0 NA NA NA
3bc8 1 Q6P6M7 90.2 0.0 X-RAY
 2007-12-18 ASN A:101 A:119 28.0 0.175 H -62.7 -37.0 28.0 0.175 0.0 HOH
 2.867
 ND2
 O
3bca 1 Q6P6M7 90.2 0.0 X-RAY
 2007-12-18 ASN A:101 A:119 26.0 0.163 H -65.5 -34.2 26.0 0.163 0.0 IOD
IOD
IOD
IOD
IOD
IOD
HOH
 7.846
3.619
7.618
7.166
3.884
6.553
2.754
 O
ND2
ND2
C
O
ND2
ND2
 I
I
I
I
I
I
O
3bcb 1 Q6P6M7 90.2 0.0 X-RAY
 2007-12-18 ASN A:101 A:119 28.0 0.175 H -61.1 -37.7 28.0 0.175 0.0 HOH
 2.833
 OD1
 O

AlphaFold DB

Entity Residue Monomer View
ID Entity Uniprot Identity Evalue Name Label Auth ASA rASA SS φ ψ
af-q9hd40-f1 1 Q9HD40 100.0 0.0 ASN A:119 A:119 21.0 0.131 H -61.4 -38.4