Variant

Genome Chromosome Position VCF ID Ref Alt mRNA Change mRNA Info
GRCh37 chr4 25158553 . G A CCDS3432.2:NM_016955.3:c.313Caa>Taa_NP_058651.3:p.105Q>* Homo sapiens Sep (O-phosphoserine) tRNA:Sec (selenocysteine) tRNA synthase (SEPSECS), mRNA.
pdb_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 
alphafold_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 

PDB

Entity Residue Monomer BioUnit Ligand View
PDB Entity Uniprot Identity Evalue ExpMethod Date Name Label Auth ASA rASA SS φ ψ ASA rASA ΔASA Interaction Name Distance Atom(p) Atom(l)
3hl2 1 Q9HD40 100.0 0.0 X-RAY
 2009-10-06 GLN A:105 A:105 29.0 0.161 -122.1 110.3 29.0 0.161 0.0 TS6
TS6
HOH
 2.829
2.829
4.552
 NE2
NE2
CB
 O1P
O1P
O
GLN B:105 B:105 3.0 0.017 B -105.3 109.2 3.0 0.017 0.0 SEP
SEP
HOH
 3.081
3.081
3.584
 OE1
OE1
CB
 O3P
O3P
O
GLN C:105 C:105 17.0 0.094 -108.9 126.6 NA NA NA
GLN D:105 D:105 4.0 0.022 -117.8 107.2 NA NA NA
4zdl 1 Q9HD40 99.8 0.0 X-RAY
 2016-04-20 GLN A:105 A:105 11.0 0.061 -82.0 123.7 11.0 0.061 0.0 PLR
FLC
HOH
 7.900
3.138
3.148
 NE2
NE2
CB
 O3P
HOB
O
GLN B:105 B:105 6.0 0.033 -67.1 115.4 6.0 0.033 0.0 PLR
HOH
 8.113
2.970
 OE1
CB
 O3P
O
4zdo 1 Q9HD40 99.8 0.0 X-RAY
 2016-04-20 GLN A:105 A:105 13.0 0.072 -99.0 108.9 13.0 0.072 0.0 PO4
PLR
HOH
 3.609
8.159
3.427
 NE2
NE2
CB
 O4
O1P
O
GLN B:105 B:105 10.0 0.056 -86.5 112.7 10.0 0.056 0.0 PO4
PLR
HOH
 3.602
8.370
3.147
 NE2
NE2
CB
 O1
O2P
O
GLN C:105 C:105 8.0 0.044 -107.5 104.1 NA NA NA
GLN D:105 D:105 10.0 0.056 -96.9 109.0 NA NA NA
4zdp 1 Q9HD40 99.8 0.0 X-RAY
 2016-04-20 GLN A:105 A:105 10.0 0.056 -94.9 114.0 10.0 0.056 0.0 PO4
PLR
HOH
 3.214
8.234
3.613
 NE2
NE2
CG
 O2
O1P
O
GLN B:105 B:105 6.0 0.033 -95.6 105.3 6.0 0.033 0.0 PO4
PLR
HOH
 3.391
8.180
3.071
 NE2
NE2
OE1
 O1
O3P
O
GLN C:105 C:105 14.0 0.078 -98.8 106.3 NA NA NA
GLN D:105 D:105 6.0 0.033 -89.2 106.6 NA NA NA
3bc8 1 Q6P6M7 90.2 0.0 X-RAY
 2007-12-18 GLN A:87 A:105 241.0 1.0 360.0 -51.1 200.0 1.0 0.0 A:Q6P6M7:0.228
 HOH
 2.721
 NE2
 O
3bca 1 Q6P6M7 90.2 0.0 X-RAY
 2007-12-18 GLN A:87 A:105 234.0 1.0 360.0 17.0 138.0 0.767 0.233 A:Q6P6M7:0.533
 IOD
IOD
IOD
IOD
IOD
IOD
HOH
 9.345
6.160
4.390
8.076
9.803
7.118
2.631
 N
N
N
NE2
CG
NE2
NE2
 I
I
I
I
I
I
O
3bcb 1 Q6P6M7 90.2 0.0 X-RAY
 2007-12-18 GLN A:87 A:105 12.0 0.067 -94.6 110.0 12.0 0.067 0.0 PO4
HOH
 2.738
3.306
 NE2
CG
 O1
O

AlphaFold DB

Entity Residue Monomer View
ID Entity Uniprot Identity Evalue Name Label Auth ASA rASA SS φ ψ
af-q9hd40-f1 1 Q9HD40 100.0 0.0 GLN A:105 A:105 10.0 0.056 -89.4 111.4