Variant
| Genome | Chromosome | Position | VCF ID | Ref | Alt | mRNA Change | mRNA Info | GRCh37 | chr4 | 25158577 | . | G | A | CCDS3432.2:NM_016955.3:c.289Cga>Tga_NP_058651.3:p.97R>* | Homo sapiens Sep (O-phosphoserine) tRNA:Sec (selenocysteine) tRNA synthase (SEPSECS), mRNA. |
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PDB
| Entity | Residue | Monomer | BioUnit | Ligand | View | ||||||||||||||||||
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| PDB | Entity | Uniprot | Identity | Evalue | ExpMethod | Date | Name | Label | Auth | ASA | rASA | SS | φ | ψ | ASA | rASA | ΔASA | Interaction | Name | Distance | Atom(p) | Atom(l) | |
| 3hl2 | 1 | Q9HD40 | 100.0 | 0.0 |
X-RAY |
2009-10-06 | ARG | A:97 | A:97 | 101.0 | 0.449 | -113.8 | -156.1 | 101.0 | 0.449 | 0.0 |
TS6 TS6 HOH |
2.968 2.968 3.404 |
NH1 NH1 NH1 |
S2P S2P O |
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| ARG | B:97 | B:97 | 55.0 | 0.244 | -116.1 | -171.8 | 55.0 | 0.244 | 0.0 |
SEP SEP HOH |
2.843 2.843 4.884 |
NH2 NH2 N |
OG OG O |
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| ARG | C:97 | C:97 | 109.0 | 0.484 | -102.8 | -170.4 | NA | NA | NA | ||||||||||||||
| ARG | D:97 | D:97 | 65.0 | 0.289 | B | -98.1 | -178.9 | NA | NA | NA | |||||||||||||
| 4zdl | 1 | Q9HD40 | 99.8 | 0.0 |
X-RAY |
2016-04-20 | ARG | A:97 | A:97 | 123.0 | 0.547 | B | -123.9 | 168.5 | 123.0 | 0.547 | 0.0 |
PLR FLC HOH |
5.635 2.632 2.387 |
C CB O |
O3P HOB O |
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| ARG | B:97 | B:97 | 124.0 | 0.551 | -113.0 | 177.1 | 124.0 | 0.551 | 0.0 |
PLR HOH |
5.606 4.607 |
O C |
O3P O |
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| 4zdo | 1 | Q9HD40 | 99.8 | 0.0 |
X-RAY |
2016-04-20 | ARG | A:97 | A:97 | 105.0 | 0.467 | B | -120.7 | 176.2 | 105.0 | 0.467 | 0.0 |
PO4 PLR HOH |
2.678 5.828 4.760 |
NH2 O C |
O4 O1P O |
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| ARG | B:97 | B:97 | 121.0 | 0.538 | B | -101.7 | 161.5 | 121.0 | 0.538 | 0.0 |
PO4 PLR HOH |
2.997 6.064 3.763 |
NH2 C NE |
O1 O2P O |
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| ARG | C:97 | C:97 | 110.0 | 0.489 | -113.9 | -177.6 | NA | NA | NA | ||||||||||||||
| ARG | D:97 | D:97 | 117.0 | 0.52 | B | -96.7 | 157.7 | NA | NA | NA | |||||||||||||
| 4zdp | 1 | Q9HD40 | 99.8 | 0.0 |
X-RAY |
2016-04-20 | ARG | A:97 | A:97 | 114.0 | 0.507 | B | -116.7 | 176.5 | 114.0 | 0.507 | 0.0 |
PO4 PLR HOH |
3.004 6.093 4.935 |
NE C N |
O2 O1P O |
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| ARG | B:97 | B:97 | 118.0 | 0.524 | B | -103.7 | 163.2 | 118.0 | 0.524 | 0.0 |
PO4 PLR HOH |
3.053 5.970 3.255 |
NE C NH2 |
O1 O3P O |
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| ARG | C:97 | C:97 | 113.0 | 0.502 | B | -114.2 | 168.5 | NA | NA | NA | |||||||||||||
| ARG | D:97 | D:97 | 120.0 | 0.533 | B | -99.8 | 164.5 | NA | NA | NA | |||||||||||||
| 3bc8 | 1 | Q6P6M7 | 90.2 | 0.0 |
X-RAY |
2007-12-18 | ARG | A:79 | A:97 | 145.0 | 0.644 | -72.5 | 360.0 | 145.0 | 0.644 | 0.0 |
HOH |
2.737 |
N |
O |
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| 3bca | 1 | Q6P6M7 | 90.2 | 0.0 |
X-RAY |
2007-12-18 | ARG | A:79 | NA:NA | DO | NA | DO | DO | DO | NA | NA | NA | ||||||
| 3bcb | 1 | Q6P6M7 | 90.2 | 0.0 |
X-RAY |
2007-12-18 | ARG | A:79 | A:97 | 117.0 | 0.52 | B | -110.1 | 169.8 | 117.0 | 0.52 | 0.0 |
PO4 HOH |
3.464 2.597 |
NE O |
O1 O |
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AlphaFold DB
| Entity | Residue | Monomer | View | ||||||||||
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| ID | Entity | Uniprot | Identity | Evalue | Name | Label | Auth | ASA | rASA | SS | φ | ψ | |
| af-q9hd40-f1 | 1 | Q9HD40 | 100.0 | 0.0 | ARG | A:97 | A:97 | 131.0 | 0.582 | B | -126.5 | 170.1 | |