Variant
| Genome | Chromosome | Position | VCF ID | Ref | Alt | mRNA Change | mRNA Info | GRCh37 | chr4 | 25158583 | . | T | A | CCDS3432.2:NM_016955.3:c.283Att>Ttt_NP_058651.3:p.95I>F | Homo sapiens Sep (O-phosphoserine) tRNA:Sec (selenocysteine) tRNA synthase (SEPSECS), mRNA. |
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PDB
| Entity | Residue | Monomer | BioUnit | Ligand | View | ||||||||||||||||||
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| PDB | Entity | Uniprot | Identity | Evalue | ExpMethod | Date | Name | Label | Auth | ASA | rASA | SS | φ | ψ | ASA | rASA | ΔASA | Interaction | Name | Distance | Atom(p) | Atom(l) | |
| 3hl2 | 1 | Q9HD40 | 100.0 | 0.0 |
X-RAY |
2009-10-06 | ILE | A:95 | A:95 | 1.0 | 0.006 | B | -117.6 | 148.5 | 1.0 | 0.006 | 0.0 |
TS6 TS6 HOH |
7.986 7.986 3.484 |
O O C |
O4P O4P O |
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| ILE | B:95 | B:95 | 2.0 | 0.011 | B | -121.2 | 143.6 | 2.0 | 0.011 | 0.0 |
SEP SEP HOH |
6.469 6.469 3.544 |
O O C |
O3P O3P O |
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| ILE | C:95 | C:95 | 1.0 | 0.006 | B | -116.6 | 148.2 | NA | NA | NA | |||||||||||||
| ILE | D:95 | D:95 | 1.0 | 0.006 | B | -118.1 | 141.4 | NA | NA | NA | |||||||||||||
| 4zdl | 1 | Q9HD40 | 99.8 | 0.0 |
X-RAY |
2016-04-20 | ILE | A:95 | A:95 | 1.0 | 0.006 | B | -115.9 | 142.1 | 1.0 | 0.006 | 0.0 |
PLR FLC HOH |
7.145 6.947 3.284 |
O O CA |
O3P HG1 O |
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| ILE | B:95 | B:95 | 2.0 | 0.011 | B | -111.7 | 145.0 | 2.0 | 0.011 | 0.0 |
PLR HOH |
7.352 3.590 |
O CA |
O3P O |
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| 4zdo | 1 | Q9HD40 | 99.8 | 0.0 |
X-RAY |
2016-04-20 | ILE | A:95 | A:95 | 2.0 | 0.011 | B | -114.9 | 141.4 | 2.0 | 0.011 | 0.0 |
PO4 PLR HOH |
8.464 7.406 3.591 |
O O C |
O1 O1P O |
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| ILE | B:95 | B:95 | 1.0 | 0.006 | B | -108.1 | 146.7 | 1.0 | 0.006 | 0.0 |
PO4 PLR HOH |
8.190 7.005 3.467 |
O O CD1 |
O4 O2P O |
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| ILE | C:95 | C:95 | 1.0 | 0.006 | B | -113.2 | 143.9 | NA | NA | NA | |||||||||||||
| ILE | D:95 | D:95 | 2.0 | 0.011 | B | -106.3 | 150.7 | NA | NA | NA | |||||||||||||
| 4zdp | 1 | Q9HD40 | 99.8 | 0.0 |
X-RAY |
2016-04-20 | ILE | A:95 | A:95 | 2.0 | 0.011 | B | -114.4 | 147.2 | 2.0 | 0.011 | 0.0 |
PO4 PLR HOH |
8.424 7.381 3.394 |
O O C |
O2 O1P O |
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| ILE | B:95 | B:95 | 2.0 | 0.011 | B | -103.0 | 148.9 | 2.0 | 0.011 | 0.0 |
PO4 PLR HOH |
8.612 7.304 3.422 |
O O C |
O4 O3P O |
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| ILE | C:95 | C:95 | 1.0 | 0.006 | B | -120.4 | 143.1 | NA | NA | NA | |||||||||||||
| ILE | D:95 | D:95 | 3.0 | 0.017 | B | -104.8 | 150.6 | NA | NA | NA | |||||||||||||
| 3bc8 | 1 | Q6P6M7 | 90.2 | 0.0 |
X-RAY |
2007-12-18 | ILE | A:77 | A:95 | 7.0 | 0.04 | B | -118.8 | 153.2 | 7.0 | 0.04 | 0.0 |
EDO HOH |
6.472 3.181 |
N O |
O1 O |
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| 3bca | 1 | Q6P6M7 | 90.2 | 0.0 |
X-RAY |
2007-12-18 | ILE | A:77 | A:95 | 12.0 | 0.069 | B | -100.8 | 150.1 | 12.0 | 0.069 | 0.0 |
IOD IOD IOD IOD IOD HOH |
8.116 8.861 6.032 9.427 4.649 3.635 |
O O C CD1 C O |
I I I I I O |
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| 3bcb | 1 | Q6P6M7 | 90.2 | 0.0 |
X-RAY |
2007-12-18 | ILE | A:77 | A:95 | 2.0 | 0.011 | B | -122.6 | 145.3 | 2.0 | 0.011 | 0.0 |
PO4 HOH |
7.067 3.487 |
O C |
O4 O |
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AlphaFold DB
| Entity | Residue | Monomer | View | ||||||||||
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| ID | Entity | Uniprot | Identity | Evalue | Name | Label | Auth | ASA | rASA | SS | φ | ψ | |
| af-q9hd40-f1 | 1 | Q9HD40 | 100.0 | 0.0 | ILE | A:95 | A:95 | 2.0 | 0.011 | B | -110.1 | 150.1 | |