Variant

Genome Chromosome Position VCF ID Ref Alt mRNA Change mRNA Info
GRCh37 chr4 25160577 . G A CCDS3432.2:NM_016955.3:c.267taC>taT_NP_058651.3:p.89Y>Y Homo sapiens Sep (O-phosphoserine) tRNA:Sec (selenocysteine) tRNA synthase (SEPSECS), mRNA.
pdb_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 
alphafold_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 

PDB

Entity Residue Monomer BioUnit Ligand View
PDB Entity Uniprot Identity Evalue ExpMethod Date Name Label Auth ASA rASA SS φ ψ ASA rASA ΔASA Interaction Name Distance Atom(p) Atom(l)
3hl2 1 Q9HD40 100.0 0.0 X-RAY
 2009-10-06 TYR A:89 A:89 64.0 0.278 T 55.0 32.7 64.0 0.278 0.0 HOH
 7.127
 O
 O
TYR B:89 B:89 58.0 0.252 T 50.1 32.6 58.0 0.252 0.0 HOH
 3.140
 O
 O
TYR C:89 C:89 59.0 0.257 T 52.2 34.2 NA NA NA
TYR D:89 D:89 58.0 0.252 T 47.5 35.1 NA NA NA
4zdl 1 Q9HD40 99.8 0.0 X-RAY
 2016-04-20 TYR A:89 A:89 57.0 0.248 T 53.1 32.0 25.0 0.109 0.139 A:Q9HD40:0.139
 HOH
 2.949
 OH
 O
TYR B:89 B:89 61.0 0.265 T 57.3 27.3 21.0 0.091 0.174 B:Q9HD40:0.152
A:Q9HD40:0.035
 HOH
 2.593
 O
 O
4zdo 1 Q9HD40 99.8 0.0 X-RAY
 2016-04-20 TYR A:89 A:89 59.0 0.257 T 56.3 30.5 25.0 0.109 0.148 A:Q9HD40:0.148
 HOH
 2.847
 O
 O
TYR B:89 B:89 58.0 0.252 T 55.1 31.9 23.0 0.1 0.152 B:Q9HD40:0.152
 HOH
 2.918
 OH
 O
TYR C:89 C:89 57.0 0.248 T 56.4 29.0 NA NA NA
TYR D:89 D:89 58.0 0.252 T 55.6 29.9 NA NA NA
4zdp 1 Q9HD40 99.8 0.0 X-RAY
 2016-04-20 TYR A:89 A:89 59.0 0.257 T 54.6 31.8 20.0 0.087 0.17 B:Q9HD40:0.035
A:Q9HD40:0.152
 HOH
 3.923
 CA
 O
TYR B:89 B:89 53.0 0.23 T 49.6 33.9 16.0 0.07 0.16 B:Q9HD40:0.152
A:Q9HD40:0.022
 HOH
 3.131
 O
 O
TYR C:89 C:89 59.0 0.257 T 54.7 31.2 NA NA NA
TYR D:89 D:89 56.0 0.243 T 50.6 32.6 NA NA NA
3bc8 1 Q6P6M7 90.2 0.0 X-RAY
 2007-12-18 TYR A:71 A:89 60.0 0.261 T 54.0 29.4 26.0 0.113 0.148 A:Q6P6M7:0.148
 EDO
HOH
 5.872
2.695
 N
O
 C2
O
3bca 1 Q6P6M7 90.2 0.0 X-RAY
 2007-12-18 TYR A:71 A:89 58.0 0.252 T 57.2 27.4 21.0 0.091 0.161 A:Q6P6M7:0.03
A:Q6P6M7:0.143
 IOD
HOH
 9.112
2.458
 C
O
 I
O
3bcb 1 Q6P6M7 90.2 0.0 X-RAY
 2007-12-18 TYR A:71 A:89 57.0 0.248 T 52.0 31.4 25.0 0.109 0.139 A:Q6P6M7:0.139
 HOH
 2.687
 O
 O

AlphaFold DB

Entity Residue Monomer View
ID Entity Uniprot Identity Evalue Name Label Auth ASA rASA SS φ ψ
af-q9hd40-f1 1 Q9HD40 100.0 0.0 TYR A:89 A:89 56.0 0.243 T 49.3 28.5